ViewGene

Locus Name:
GeneID:
Location:

GeneID:2237
TrivialName: PA14_70860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70860
PAO1 Ortholog Locus:PA5369
Sequence Length:972
Protein Length:323
Start: 6312102
Stop: 6311131
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08754.1|AE004949_1 (AE004949) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 323/323 (100%), Positives = 323/323 (100%)
Sequence:
ATGAAACTCAAGCGTTTGATGGCGGCCCTGACGTTCGTCGCCGCAGGCGTAGGCGCCGCTTCCGCGGTAGCC
GCGATCGACCCGGCGCTGCCGGAATATCAGAAAGCCAGCGGTGTGTCGGGCAACCTGTCGAGCGTCGGCTCC
GACACTCTGGCCAACCTGATGACCATGTGGGCCGAGGAGTACAAGCGCCTCTATCCGAACGTGAACATCCAG
ATCCAGGCTGCCGGCTCTTCTACCGCGCCGCCGGCCCTGACCGAAGGCACCGCCAACCTGGGCCCGATGAGC
CGCAAGATGAAGGACGTCGAGCTGCAGGCTTTCGAGCAGAAGTACGGCTATAAGCCGACCGCCGTCCCGGTC
GCTGTCGACGCCCTGGCGATCTTCGTGCACAAGGACAACCCGATCAAAGGCCTGACCATGCAGCAGGTCGAT
GCGATCTTCTCCGCTACCCGCCTGTGCGGCAGCAAGCAGGACGTGAAGACCTGGGGCGACCTGGGCCTGACC
GGTGACTGGGCGAAGAAGCCGGTGCAACTGTTCGGCCGCAACTCGGTTTCCGGCACCTACGGCTACTTCAAG
GAAGAAGCCCTGTGCAAAGGCGACTTCCGTCCGAACGTCAACGAGCAGCCGGGTTCGGCTTCCGTGGTGCAG
TCGGTCAGCCAGTCGCTGAACGGCATCGGCTACTCCGGTATCGGCTACAAGACCGCCAGCGTGAAGACCGTG
GCCCTGGCCAAGAAGGAAGGCGCTGCCTTCGTCGAGGACAACGAGCAGAACGCCCTGAACGGCACCTACCCG
CTGTCGCGCTTCCTCTACGTCTACGTGAACAAGGCACCGAACAAGCCGCTGGATCCGCTGGAGGCTCAGTTC
CTCAAGCTGGTCCTGTCCAAGACCGGCCAGCAGGTCGTGGTCAAGGACGGCTACATCCCGCTGCCGGCCAAG
GTGGCCGAGAAGGCGATCAAGGAACTGGGCCTGTAA
Translation:
MKLKRLMAALTFVAAGVGAASAVAAIDPALPEYQKASGVSGNLSSVGSDTLANLMTMWAEEYKRLYPNVNIQ
IQAAGSSTAPPALTEGTANLGPMSRKMKDVELQAFEQKYGYKPTAVPVAVDALAIFVHKDNPIKGLTMQQVD
AIFSATRLCGSKQDVKTWGDLGLTGDWAKKPVQLFGRNSVSGTYGYFKEEALCKGDFRPNVNEQPGSASVVQ
SVSQSLNGIGYSGIGYKTASVKTVALAKKEGAAFVEDNEQNALNGTYPLSRFLYVYVNKAPNKPLDPLEAQF
LKLVLSKTGQQVVVKDGYIPLPAKVAEKAIKELGL*
AnnotationID:2245GeneID:2237
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:26
Gene Name:
Confidence Code:3
GeneProduct:putative phosphate ABC transporter, periplasmic phosphate-binding protein
Cell Localization:()
Synonyms:PA5369
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0226
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70894.1|AE016733_6 (AE016794) phosphate ABC transporter, periplasmic phosphate-binding
           protein [Pseudomonas putida KT2440]
          Length = 332

 Score =  567 bits (1462), Expect = e-161
 Identities = 279/323 (86%), Positives = 300/323 (92%)

>gb|AAO58906.1| (AE016876) phosphate ABC transporter, periplasmic phosphate-binding
           protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 332

 Score =  531 bits (1368), Expect = e-150
 Identities = 260/323 (80%), Positives = 289/323 (89%)

>gb|AAN54617.1|AE015602_3 (AE015602) phosphate-binding protein [Shewanella oneidensis MR-1]
          Length = 323

 Score =  477 bits (1228), Expect = e-134
 Identities = 233/323 (72%), Positives = 276/323 (85%), Gaps = 2/323 (0%)

Structural Features:
COG0226, PstS, ABC-type phosphate transport system, periplasmic component 
[Inorganic ion transport and metabolism]
CD-Length = 318 residues,  98.4% aligned
Score =  206 bits (525), Expect = 3e-54
Identities = 110/327 (33%), Positives = 151/327 (46%), Gaps = 27/327 (8%)

Genomic Context:
Comment:
ReferenceID:4477
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21623
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34730
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2237_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2237

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3795 PA5369_tr translation of PA5369 323 99.99 99.99 0 1641.0
116969 gb|AAG08754.1|AE004949_1 (AE004949) hypothetical protein PA5369 [Pseudomonas aeruginosa PAO1] 323 99.99 99.99 0 1641.0
116970 dbj|BAA75661.1| (AB017492) phosphate binding protein [Pseudomonas aeruginosa] 323 99.99 99.99 0 1641.0
116971 gb|AAN70894.1|AE016733_6 (AE016794) phosphate ABC transporter, periplasmic phosphate-binding protein [Pseudomonas putida KT2440] 332 84.03 90.36 9 1462.0
116972 dbj|BAA75654.1| (AB017356) phosphate-binding protein [Pseudomonas putida] 334 81.13 88.62 11 1401.0
GC ORFID: 45239How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5369Glimmer Score:
Start: 5575791Stop: 5574820
Length: 972
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA5369 translation of PA5369Homolog Bit Score 636.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4195 (ORF: BLASTX 527.0), t_PA5369 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACTCAAGCGTTTGATGGCGGCCCTGACGTTCGTCGCCGCAGGCGTAGGCGCCGCTTCCGCGGTAGCC
GCGATCGACCCGGCGCTGCCGGAATATCAGAAAGCCAGCGGTGTGTCGGGCAACCTGTCGAGCGTCGGCTCC
GACACTCTGGCCAACCTGATGACCATGTGGGCCGAGGAGTACAAGCGCCTCTATCCGAACGTGAACATCCAG
ATCCAGGCTGCCGGCTCTTCTACCGCGCCGCCGGCCCTGACCGAAGGCACCGCCAACCTGGGCCCGATGAGC
CGCAAGATGAAGGACGTCGAGCTGCAGGCTTTCGAGCAGAAGTACGGCTATAAGCCGACCGCCGTCCCGGTC
GCTGTCGACGCCCTGGCGATCTTCGTGCACAAGGACAACCCGATCAAAGGCCTGACCATGCAGCAGGTCGAT
GCGATCTTCTCCGCTACCCGCCTGTGCGGCAGCAAGCAGGACGTGAAGACCTGGGGCGACCTGGGCCTGACC
GGTGACTGGGCGAAGAAGCCGGTGCAACTGTTCGGCCGCAACTCGGTTTCCGGCACCTACGGCTACTTCAAG
GAAGAAGCCCTGTGCAAAGGCGACTTCCGTCCGAACGTCAACGAGCAGCCGGGTTCGGCTTCCGTGGTGCAG
TCGGTCAGCCAGTCGCTGAACGGCATCGGCTACTCCGGTATCGGCTACAAGACCGCCAGCGTGAAGACCGTG
GCCCTGGCCAAGAAGGAAGGCGCTGCCTTCGTCGAGGACAACGAGCAGAACGCCCTGAACGGCACCTACCCG
CTGTCGCGCTTCCTCTACGTCTACGTGAACAAGGCACCGAACAAGCCGCTGGATCCGCTGGAGGCTCAGTTC
CTCAAGCTGGTCCTGTCCAAGACCGGCCAGCAGGTCGTGGTCAAGGACGGCTACATCCCGCTGCCGGCCAAG
GTGGCCGAGAAGGCGATCAAGGAACTGGGCCTGTAA