ViewGene
Locus Name:
GeneID:
Location:

GeneID:2233
TrivialName: PA14_24430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24430
PAO1 Ortholog Locus:PA3070
Sequence Length:981
Protein Length:326
Start: 2128660
Stop: 2127680
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06458.1|AE004731_6 (AE004731) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 326/326 (100%), Positives = 326/326 (100%)
Sequence:
ATGAGCAACGAGCCAGAAAGCACGCAGCACAAGAGCGCCCTGCAGGGACTGAAGGGCTACCTGTCGAGCCAG
ATCCTCGGCCAGGAAAAACTCGTCGACCGCCTGCTGATCGCGCTGCTAGCCGACGGCCACCTGCTGGTGGAA
GGCGCGCCGGGACTGGCCAAGACCAAGGCCATCAAGGACCTCGCCGAAGGCCTCGAAGCCGAGTTCCACCGT
ATCCAGTTCACTCCCGACCTGCTCCCCGCCGACATCACCGGCACCGAGATCTACCGTCCGGAGACCGGCACC
TTCGTGTTCCAGCAAGGCCCGATCTTCCATCACCTGGTGCTGGCCGACGAGATCAACCGCGCCCCGGCCAAG
GTGCAGTCGGCGCTGCTCGAAGCCATGGCCGAGCGCCAGGTTTCGGTCGGCCGCAGCACCTACGACCTGCCA
CAGCTGTTCCTGGTGATGGCGACACAGAACCCGATCGAGCAGGAAGGTACCTACCCGTTGCCGGAAGCCCAG
CTCGACCGCTTCCTCATGCACGTCAAGATCGGCTACCCGGAGGCCTCGGTGGAACGCCGCATCCTCCAGCAG
GCGCGTGGCGAGGCACTGAACGGCGAGGCCCGGCCGGAGCGCCGGGTGACCCAGGAAACCATCTTCGCCGCG
CGCCAGGAAATCCTCGGCCTGTACATGGCCGACGCGGTGGAGGAATACCTGGTGCAACTGATCATGGCCACC
CGCACCCCGGCCAAGCACGACGCGGAACTCGCCGAATGGATCTCCTACGGCGCCAGCCCGCGCGGCTCCATC
GCCCTCGACCGCTGCGCGCGCGCCCACGCCTGGCTGGGCGGACGCGACTTCGTCAGCCCCGAGGACATCCAG
GCGGTGCTGTTCGACGTGCTGCGCCATCGCCTGATCCTGACCTTCGAGGCGGAAGCCGCCGGCATCGACCAG
GACCGGGTCGTGCAGCGCATCCTCGACGTGGTCGCCGTGGCCTGA
Translation:
MSNEPESTQHKSALQGLKGYLSSQILGQEKLVDRLLIALLADGHLLVEGAPGLAKTKAIKDLAEGLEAEFHR
IQFTPDLLPADITGTEIYRPETGTFVFQQGPIFHHLVLADEINRAPAKVQSALLEAMAERQVSVGRSTYDLP
QLFLVMATQNPIEQEGTYPLPEAQLDRFLMHVKIGYPEASVERRILQQARGEALNGEARPERRVTQETIFAA
RQEILGLYMADAVEEYLVQLIMATRTPAKHDAELAEWISYGASPRGSIALDRCARAHAWLGGRDFVSPEDIQ
AVLFDVLRHRLILTFEAEAAGIDQDRVVQRILDVVAVA*
AnnotationID:2241GeneID:2233
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 13:01:50
Gene Name:
Confidence Code:3
GeneProduct:putative MoxR-like ATPase
Cell Localization:()
Synonyms:moxR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative methanol dehydrogenase regulatory protein
Functional Category Confidence Code:5
COGs:COG0714
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57228.1| (AE016869) moxR protein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 319

 Score =  561 bits (1446), Expect = e-159
 Identities = 280/318 (88%), Positives = 307/318 (96%)

>gb|AAO08429.1|AE016813_181 (AE016813) MoxR-like ATPase [Vibrio vulnificus CMCP6]
          Length = 318

 Score =  413 bits (1061), Expect = e-115
 Identities = 203/315 (64%), Positives = 260/315 (82%), Gaps = 2/315 (0%)

>gb|AAM42497.1| (AE012439) methanol dehydrogenase regulatory protein [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 339

 Score =  383 bits (983), Expect = e-106
 Identities = 194/310 (62%), Positives = 246/310 (79%), Gaps = 3/310 (0%)






 
Structural Features:
COG0714, COG0714, MoxR-like ATPases 
CD-Length = 329 residues,  99.4% aligned
Score =  251 bits (641), Expect = 1e-67
Identities = 137/335 (40%), Positives = 199/335 (59%), Gaps = 17/335 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4469




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21615




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32442




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2233_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2233
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3789
                           PA3070_tr
                           translation of PA3070
                           326
                           99.99
                           99.99
                           0
                           1640.0
     

     
     
116812
                           gb|AAG06458.1|AE004731_6
                           (AE004731) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           326
                           99.99
                           99.99
                           0
                           1640.0
     

     
     
116813
                           gb|AAO57228.1|
                           (AE016869) moxR protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           326
                           85.88
                           94.17
                           7
                           1445.0
     

     
     
116814
                           gb|AAN67646.1|AE016394_7
                           (AE016781) ATPase, putative [Pseudomonas putida KT2440]
                           326
                           85.58
                           93.25
                           7
                           1432.0
     

     
     
116817
                           dbj|BAC62794.1|
                           (AP005089) MoxR-related protein [Vibrio parahaemolyticus]
                           327
                           62.38
                           81.34
                           10
                           1086.0
     

     






      

          
GC ORFID: 45235How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3070Glimmer Score: 

          
Start: 2825270Stop: 2826250

          
Length: 981


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3070 translation of PA3070Homolog Bit Score 636.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene663 (ORF: BLASTX 561.0), psyr_15may02_Scaffold12_revised_gene1950 (ORF: BLASTX 264.0), t_PA4322 (ORF: BLASTX 257.0), t_PA2875 (ORF: BLASTX 230.0), psyr_15may02_Scaffold1_revised_gene1040 (ORF: BLASTX 212.0), t_PA3070 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAACGAGCCAGAAAGCACGCAGCACAAGAGCGCCCTGCAGGGACTGAAGGGCTACCTGTCGAGCCAG 
ATCCTCGGCCAGGAAAAACTCGTCGACCGCCTGCTGATCGCGCTGCTAGCCGACGGCCACCTGCTGGTGGAA 
GGCGCGCCGGGACTGGCCAAGACCAAGGCCATCAAGGACCTCGCCGAAGGCCTCGAAGCCGAGTTCCACCGT 
ATCCAGTTCACTCCCGACCTGCTCCCCGCCGACATCACCGGCACCGAGATCTACCGTCCGGAGACCGGCACC 
TTCGTGTTCCAGCAAGGCCCGATCTTCCATCACCTGGTGCTGGCCGACGAGATCAACCGCGCCCCGGCCAAG 
GTGCAGTCGGCGCTGCTCGAAGCCATGGCCGAGCGCCAGGTTTCGGTCGGCCGCAGCACCTACGACCTGCCA 
CAGCTGTTCCTGGTGATGGCGACACAGAACCCGATCGAGCAGGAAGGTACCTACCCGTTGCCGGAAGCCCAG 
CTCGACCGCTTCCTCATGCACGTCAAGATCGGCTACCCGGAGGCCTCGGTGGAACGCCGCATCCTCCAGCAG 
GCGCGTGGCGAGGCACTGAACGGCGAGGCCCGGCCGGAGCGCCGGGTGACCCAGGAAACCATCTTCGCCGCG 
CGCCAGGAAATCCTCGGCCTGTACATGGCCGACGCGGTGGAGGAATACCTGGTGCAACTGATCATGGCCACC 
CGCACCCCGGCCAAGCACGACGCGGAACTCGCCGAATGGATCTCCTACGGCGCCAGCCCGCGCGGCTCCATC 
GCCCTCGACCGCTGCGCGCGCGCCCACGCCTGGCTGGGCGGACGCGACTTCGTCAGCCCCGAGGACATCCAG 
GCGGTGCTGTTCGACGTGCTGCGCCATCGCCTGATCCTGACCTTCGAGGCGGAAGCCGCCGGCATCGACCAG 
GACCGGGTCGTGCAGCGCATCCTCGACGTGGTCGCCGTGGCCTGA