ViewGene
Locus Name:
GeneID:
Location:

GeneID:2232
TrivialName: PA14_47890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47890
PAO1 Ortholog Locus:PA1263
Sequence Length:945
Protein Length:314
Start: 4262858
Stop: 4261914
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04652.1|AE004556_2 (AE004556) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 311/314 (99%), Positives = 311/314 (99%)
Sequence:
ATGCGCTTCTGGCTAACCCGGTACCAGTTCTTGCTTATCCTGGTATTGGCGCTACCCGTCTGCCCTCCGGAG
GACTTCGCCATGCCCCTCGACGCCCCTGCCAGCCACGCTGCGGAAAGCCCCGCGCAGCCGTCCCGCGCCGAA
CAGCTGGGGGCCTTCCTGCGCCGCCGGCGGGAAAGCATCGAGCCGCAGCGGGTCGGCATTTCCCGCCTCGGC
CGCCGACGCACGCCGGGCCTGCGTCGCGAGGAGGTGGCGCAGCTCGCCGGGGTCGGCGTGACCTGGTACACC
TGGCTGGAGCAGGGCCGCGCGGTACGCGCCTCGGAGCAGGTGATCGGAGCCATCGCCCGGGCCCTGCTGTGC
AATGAGACGGAAACCCACCACCTGTTCAACCTCGCCGGGCTGGCCGCGCCGACCTCGGCGCGGCGGGTGGTC
TGCGAGAAGCCTTCGGCCGCCACCCAGGCCATCCTCGATGCCCTCGACCCGTTGCCGGCCATGGTGCAGAAC
GCCCGTTTCGACATCCGCGGCTACAACCGCGCCTATTGCCGGCTGGTGGGCATCGACCTGGCGGAGATCCCC
GAGGAAGACCGCAACTGCATCTACCTGGCGCTGACCCACGAGCGCTGGCGCTACTGCATGGCCAACCGCGAG
GAGGCGTTGCCGCGGATGGTCGGCTTCTTCCGCGCGGCAATGGTCGAGCGCATGGGCGATCCGCTGTGGGAG
CGGCAGTTGCAGCGCTGCCTGGAGGTTTCGGCGGAGTTCCGCGAGATCTGGCGGCGCAATGAGGTGATGGGT
ATCGAAAACCAGCTCAAGCGCTTCCGTCATGCGCGCTGCGGCGAATTCGAACTGCAGCAGACCAACTGGTGG
TCGGCGCCGAAGAACGGCGATCGCCTGCTGGTCTTCGTCCCCCTCGACGACCACGCCCGCGACTGCCTGGAG
CAACTGTGA
Translation:
MRFWLTRYQFLLILVLALPVCPPEDFAMPLDAPASHAAESPAQPSRAEQLGAFLRRRRESIEPQRVGISRLG
RRRTPGLRREEVAQLAGVGVTWYTWLEQGRAVRASEQVIGAIARALLCNETETHHLFNLAGLAAPTSARRVV
CEKPSAATQAILDALDPLPAMVQNARFDIRGYNRAYCRLVGIDLAEIPEEDRNCIYLALTHERWRYCMANRE
EALPRMVGFFRAAMVERMGDPLWERQLQRCLEVSAEFREIWRRNEVMGIENQLKRFRHARCGEFELQQTNWW
SAPKNGDRLLVFVPLDDHARDCLEQL*
AnnotationID:2240GeneID:2232
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 13:01:31
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1263
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC73359.1| (AP005043) putative DNA-binding protein [Streptomyces avermitilis
           MA-4680]
          Length = 300

 Score =  244 bits (622), Expect = 6e-64
 Identities = 129/285 (45%), Positives = 177/285 (62%), Gaps = 7/285 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4467




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21613




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37483




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2232_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2232
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3788
                           PA1263_tr
                           translation of PA1263
                           314
                           99.04
                           99.04
                           0
                           1641.0
     

     
     
116808
                           gb|AAG04652.1|AE004556_2
                           (AE004556) hypothetical protein PA1263 [Pseudomonas aeruginosa PAO1]
                           314
                           99.04
                           99.04
                           0
                           1641.0
     

     
     
116810
                           emb|CAB69722.1|
                           (AL939112) putative DNA-binding protein [Streptomyces coelicolor A3(2)]
                           331
                           38.36
                           51.66
                           50
                           610.0
     

     
     
116809
                           dbj|BAC73359.1|
                           (AP005043) putative DNA-binding protein [Streptomyces avermitilis MA-4680]
                           337
                           37.98
                           52.52
                           60
                           623.0
     

     
     
116811
                           dbj|BAB88979.1|
                           (AB083551) putative DNA-binding protein [Bacillus cereus]
                           319
                           15.98
                           21.00
                           218
                           245.0
     

     






      

          
GC ORFID: 45234How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1263Glimmer Score: 

          
Start: 691051Stop: 691995

          
Length: 945


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1263 translation of PA1263Homolog Bit Score 636.0

          
Other Homologs:  t_PA1263 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCTTCTGGCTAACCCGGTACCAGTTCTTGCTTATCCTGGTATTGGCGCTACCCGTCTGCCCTCCGGAG 
GACTTCGCCATGCCCCTCGACGCCCCTGCCAGCCACGCTGCGGAAAGCCCCGCGCAGCCGTCCCGCGCCGAA 
CAGCTGGGGGCCTTCCTGCGCCGCCGGCGGGAAAGCATCGAGCCGCAGCGGGTCGGCATTTCCCGCCTCGGC 
CGCCGACGCACGCCGGGCCTGCGTCGCGAGGAGGTGGCGCAGCTCGCCGGGGTCGGCGTGACCTGGTACACC 
TGGCTGGAGCAGGGCCGCGCGGTACGCGCCTCGGAGCAGGTGATCGGAGCCATCGCCCGGGCCCTGCTGTGC 
AATGAGACGGAAACCCACCACCTGTTCAACCTCGCCGGGCTGGCCGCGCCGACCTCGGCGCGGCGGGTGGTC 
TGCGAGAAGCCTTCGGCCGCCACCCAGGCCATCCTCGATGCCCTCGACCCGTTGCCGGCCATGGTGCAGAAC 
GCCCGTTTCGACATCCGCGGCTACAACCGCGCCTATTGCCGGCTGGTGGGCATCGACCTGGCGGAGATCCCC 
GAGGAAGACCGCAACTGCATCTACCTGGCGCTGACCCACGAGCGCTGGCGCTACTGCATGGCCAACCGCGAG 
GAGGCGTTGCCGCGGATGGTCGGCTTCTTCCGCGCGGCAATGGTCGAGCGCATGGGCGATCCGCTGTGGGAG 
CGGCAGTTGCAGCGCTGCCTGGAGGTTTCGGCGGAGTTCCGCGAGATCTGGCGGCGCAATGAGGTGATGGGT 
ATCGAAAACCAGCTCAAGCGCTTCCGTCATGCGCGCTGCGGCGAATTCGAACTGCAGCAGACCAACTGGTGG 
TCGGCGCCGAAGAACGGCGATCGCCTGCTGGTCTTCGTCCCCCTCGACGACCACGCCCGCGACTGCCTGGAG 
CAACTGTGA