ViewGene
Locus Name:
GeneID:
Location:

GeneID:2231
TrivialName: PA14_01830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01830
PAO1 Ortholog Locus:PA0148
Sequence Length:951
Protein Length:316
Start: 167065
Stop: 168015
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03538.1|AE004453_1 (AE004453) probable adenosine deaminase [Pseudomonas aeruginosa PAO1]
Identities = 315/316 (99%), Positives = 316/316 (100%)
Sequence:
ATGTACGAATGGCTCAACGCCTTGCCCAAGGCCGAACTGCACCTGCACCTGGAAGGTACCCTGGAGCCGGAG
CTGCTGTTCGCCCTCGCCGAGCGCAACCGCATCGCCCTGCCCTGGAACGACGTCGAGACCCTGCGCAAGGCC
TACGCCTTCAACAACCTGCAGGAATTCCTCGACCTCTACTACGCCGGCGCCGACGTGCTGCGCACCGAGCAG
GACTTCTACGACCTGACCTGGGCCTACCTGCAGAAGTGCAAGGCGCAGAACGTCGTCCACGTCGAGCCGTTC
TTCGACCCGCAGACCCACACCGATCGCGGCATTCCCTTCGAGGTGGTGCTCGCCGGCATCCGCGCCGCGCTG
CAGGACGGCGAGAAGCTGCTGGGCATCCGCCATGGGCTGATCCTCAGCTTCCTCCGCCACCTCAGCGAGGAA
CAGGCGCAGAAAACCCTCGACCAGGCGCTGCCGTTCCGCGACGCCTTCATCGCCGTCGGCCTCGACAGCTCG
GAAGTCGGGCATCCGCCGAGCAAGTTCCAGCGGGTCTTCGACCGCGCCCGCAGCGAAGGCTTCCTCACCGTC
GCCCATGCCGGCGAAGAGGGGCCGCCCGAGTACATCTGGGAAGCCCTCGACCTGCTCAAGGTCGAGCGCATC
GACCACGGCGTGCGCGCCTTCGAGGACGAGCGGCTGATGCGGCGGCTGATCGACGAACAGATCCCGCTGACC
GTCTGCCCGCTGTCCAACACCAAGCTCTGCGTGTTCGACGACATGAGCCAGCACACCATCCTCGACATGCTC
GAACGCGGCGTGAAGGTGACGGTGAACTCCGATGACCCGGCCTACTTCGGCGGCTATGTCACCGAGAACTTC
CATGCCTTGCAGCAGAGCCTGGGAATGACCGAGGAGCAGGCCAGGCGCCTGGCGCAGAACAGCCTGGATGCG
CGCCTGGTGAAGTGA
Translation:
MYEWLNALPKAELHLHLEGTLEPELLFALAERNRIALPWNDVETLRKAYAFNNLQEFLDLYYAGADVLRTEQ
DFYDLTWAYLQKCKAQNVVHVEPFFDPQTHTDRGIPFEVVLAGIRAALQDGEKLLGIRHGLILSFLRHLSEE
QAQKTLDQALPFRDAFIAVGLDSSEVGHPPSKFQRVFDRARSEGFLTVAHAGEEGPPEYIWEALDLLKVERI
DHGVRAFEDERLMRRLIDEQIPLTVCPLSNTKLCVFDDMSQHTILDMLERGVKVTVNSDDPAYFGGYVTENF
HALQQSLGMTEEQARRLAQNSLDARLVK*
AnnotationID:2239GeneID:2231
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 06:06:50
Gene Name:
Confidence Code:3
GeneProduct:putative adenosine deaminase
Cell Localization:()
Synonyms:add
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1816,pfam00962,
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54299.1| (AE016858) adenosine deaminase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 317

 Score =  581 bits (1497), Expect = e-165
 Identities = 280/316 (88%), Positives = 299/316 (94%)

>gb|AAN66218.1|AE016249_10 (AE016776) adenosine deaminase [Pseudomonas putida KT2440]
          Length = 315

 Score =  574 bits (1480), Expect = e-163
 Identities = 280/315 (88%), Positives = 296/315 (93%)

>emb|CAE31752.1| (BX640440) adenosine deaminase [Bordetella bronchiseptica]
          Length = 317

 Score =  509 bits (1310), Expect = e-143
 Identities = 247/314 (78%), Positives = 275/314 (87%)








 
Structural Features:
COG1816, Add, Adenosine deaminase [Nucleotide transport and metabolism]
CD-Length = 345 residues,  93.3% aligned
Score =  356 bits (916), Expect = 2e-99
Identities = 151/323 (46%), Positives = 197/323 (60%), Gaps = 9/323 (2%)

pfam00962, A_deaminase, Adenosine/AMP deaminase.
CD-Length = 332 residues,  94.9% aligned
Score =  217 bits (553), Expect = 2e-57
Identities = 103/315 (32%), Positives = 152/315 (48%), Gaps = 12/315 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4465




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21611




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33522




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2231_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2231
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3787
                           PA0148_tr
                           translation of PA0148
                           316
                           99.68
                           99.99
                           0
                           1643.0
     

     
     
116797
                           gb|AAG03538.1|AE004453_1
                           (AE004453) probable adenosine deaminase [Pseudomonas aeruginosa PAO1]
                           316
                           99.68
                           99.99
                           0
                           1643.0
     

     
     
116799
                           gb|AAN66218.1|AE016249_10
                           (AE016776) adenosine deaminase [Pseudomonas putida KT2440]
                           316
                           88.60
                           93.67
                           1
                           1480.0
     

     
     
116798
                           gb|AAO54299.1|
                           (AE016858) adenosine deaminase [Pseudomonas syringae pv. tomato str. DC3000]
                           317
                           88.32
                           94.32
                           1
                           1497.0
     

     
     
116800
                           emb|CAE31752.1|
                           (BX640440) adenosine deaminase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           317
                           77.91
                           86.75
                           1
                           1308.0
     

     






      

          
GC ORFID: 45233How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0148Glimmer Score: 

          
Start: 5968404Stop: 5969354

          
Length: 951


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0148 translation of PA0148Homolog Bit Score 637.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3603 (ORF: BLASTX 585.0), t_PA0148 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACGAATGGCTCAACGCCTTGCCCAAGGCCGAACTGCACCTGCACCTGGAAGGTACCCTGGAGCCGGAG 
CTGCTGTTCGCCCTCGCCGAGCGCAACCGCATCGCCCTGCCCTGGAACGACGTCGAGACCCTGCGCAAGGCC 
TACGCCTTCAACAACCTGCAGGAATTCCTCGACCTCTACTACGCCGGCGCCGACGTGCTGCGCACCGAGCAG 
GACTTCTACGACCTGACCTGGGCCTACCTGCAGAAGTGCAAGGCGCAGAACGTCGTCCACGTCGAGCCGTTC 
TTCGACCCGCAGACCCACACCGATCGCGGCATTCCCTTCGAGGTGGTGCTCGCCGGCATCCGCGCCGCGCTG 
CAGGACGGCGAGAAGCTGCTGGGCATCCGCCATGGGCTGATCCTCAGCTTCCTCCGCCACCTCAGCGAGGAA 
CAGGCGCAGAAAACCCTCGACCAGGCGCTGCCGTTCCGCGACGCCTTCATCGCCGTCGGCCTCGACAGCTCG 
GAAGTCGGGCATCCGCCGAGCAAGTTCCAGCGGGTCTTCGACCGCGCCCGCAGCGAAGGCTTCCTCACCGTC 
GCCCATGCCGGCGAAGAGGGGCCGCCCGAGTACATCTGGGAAGCCCTCGACCTGCTCAAGGTCGAGCGCATC 
GACCACGGCGTGCGCGCCTTCGAGGACGAGCGGCTGATGCGGCGGCTGATCGACGAACAGATCCCGCTGACC 
GTCTGCCCGCTGTCCAACACCAAGCTCTGCGTGTTCGACGACATGAGCCAGCACACCATCCTCGACATGCTC 
GAACGCGGCGTGAAGGTGACGGTGAACTCCGATGACCCGGCCTACTTCGGCGGCTATGTCACCGAGAACTTC 
CATGCCTTGCAGCAGAGCCTGGGAATGACCGAGGAGCAGGCCAGGCGCCTGGCGCAGAACAGCCTGGATGCG 
CGCCTGGTGAAGTGA