ViewGene
Locus Name:
GeneID:
Location:

GeneID:223
TrivialName: PA14_11630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11630
PAO1 Ortholog Locus:PA4036
Sequence Length:2301
Protein Length:766
Start: 1009679
Stop: 1007379
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07423.1|AE004820_8 (AE004820) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 763/766 (99%), Positives = 763/766 (99%)
Sequence:
ATGAAGGCGCTCGACCGCCAGGACGAGCCCAGCCAGGCGCAGCGGCTGTTCCGCGGCCTGGTGCGCGAATGG
CTGCTGGTCAGCCTGCTGCTCCTTCCGCTCACCGCCCTGCTTTCGCTGAGCAGCGGCCTGCCGCTGAACAAC
CTGCTCTACGACCGCCTGCGCAACCTCACCCCGCTGGCCGTCGATCCGCGCATCCTCGTCGTCGCCATCGAC
GACCGTAGCCTGGAAAGCCTCGGTCGTTGGCCCTGGCCGCGCAGCGTCCACGCCGAGCTGCTGGATCGCCTG
GCCGCCGCCGGCGCACGCAGCGTACTGCTCGACGTGATCTTCAGCGAACCCTCCTCCAATCCGGACAGCGAC
CGCCAGTTGGCAAGATCGCTGTGCCGGGCCGGCAACGTCCTCCTGCCACTGCTGCGCGAAAGCGTGCCGCGC
TACGGCGAACCGCCACGGGAGATACCGCCGACCGCGCCGCTGGCCGGCTGCGCCGCCGGCATCGGGCATATC
AACGTCGAAGCGGACAGCGACGGCACGGTGCGCAGCGTCTACCTGCGCGAAGGACCGCTCGGCCAGCCGCGC
CCGCTGCTCGCCTGGCAAGCATTCGCCGATGCCGGCGCCATGCCCATGCCCGGCCTCGACGACATGCGCAAC
CTGCCCGGCTGGCAGCGTGACCACGCCATCCGCATTCCCTTCATCGGTGCCGACGCGGGCTTCCCCAGCGTG
CCCTACGTCAGCGTGTTGCGCGGCGAGGTGCCGGACAGCCTGCTGCGCGACCGCCTGGTCCTGGTCGGCGCC
ACCGCGCCGGGCCTCGGCGACCGCTATGTCACCCCGCTGTCGGCCAGCCTCGGCACCACGCCGGGGGTGGAG
ATCCAGGCCAACATCCTCAACGGCCTGTTGCAGCAGCGCACCGCCGTCGACCTGCAACCCTGGCTCGCCGCC
CTGCTCTCCGCCGCCAGCGTAGCGCTGCTGCTCGGCCTGATGCTGTTCCGCTCGCGCCACGCCTTGCTCCTC
ACCCTGGCCTGCGCGGCCCTGGCCCTGGGTCTTTCCTGGGCGCTGCTGCTCAACGGCTGGTGGTGGTCACCG
CTGGCCAGCCTGGTCGGCCTGCTGCTGGCCTACCTGATCTGGAGCTGGCGCCGGCTGAACGCGGTGCTCGCC
TACTTCGGCTGGGAACTGGCGCGCCTCGACCGCGAGCCCAAGGTGCTGCCCGAGCGGGCCAGCCCCCCGCGC
GCCGGCAACGATCCATTGCAGAACCGCATCGCCGCCCTGGAGCAGGCGGTCAGCCGCACCCGCGACAGCCGG
CGGTTCATGGCCGACGGCCTGGAAGGCCTGCCGGTGGCGACCCTGATCTGCGACCCGCAGGGGCAGATCCTG
CTGGCCAACCGCAAGGCACGCGACCTGTTCGGCGGCGAGCTGCGCGGCGCCGAACTGCGCCAGTGCCTGGCC
GAACTCGGCCATCCGAGCCTCGCCGGCGGCGCCCGCCCAACGCTGGAAACCCTGGAAGCCATCGAGTTCCGC
GACCATCGGGAACGCGACCTGCGCCTCGACCTGGCGCGCCTGCTGCCGGTCGAAAGCGAAACCGCCATCGGC
TGGCTGGTGAGCCTGATCGACCTGAGCGCCGAACGCGATGCCGAGCGCCAGCGCGCCACCCTCCTGCGCTTC
CTCTCCCACGACCTGCGCGCGCCGCACTCGGCGATCCTCGCCCTGCTCGACGTTCGCCCCGCCGAGGACGAA
GCCGGCCAGCAGGTCTACCGACAGATAGAGCAGCAGGTCCGTCGCGCCCTGGGCCTGACCGACGCCTTCGTG
CAACTGGCCAAGGCCGAATCCGACGCCTACCGCTTCGAAGCGTGCATGTTCACCATGTTGGCGATGGACGCC
GCCGACCAGCTCTGGCCCCTCGCGCAACAGAAGGACATCGACCTGCGGCGCGACTGGGACGACGAGCAGGAA
CCGATGGTCTGGGCCGACCCCGGCCTGCTCACGCGCGCGCTGTTCAACCTGCTGGAGAATGCGGTCAAGTAC
AGCCCGGCGGGGACCGTCGTCAGCCTGAGCATCCGCCTCGAAGGCGACTGGCTGAGCTGCCGGATCGTCGAC
CAGGGCAAAGGTATCGCGGCCGCCGAACTACCGCGCCTGTTCAGCCAGTACCAGCGCTTCGCTTCCGCCGAG
GGCAGCACCGGCCTGGGCCTGGGGCTGGCCATGGTCAAGACGGTGATCGACCGGCACGGCGGCAGGATCGGT
TGCCAGAGCCAGGTTGGCCAGGGCACCACTTTCGAGATTCGCCTTCCGCTGCTGAAAGGCGAGGAATAA
Translation:
MKALDRQDEPSQAQRLFRGLVREWLLVSLLLLPLTALLSLSSGLPLNNLLYDRLRNLTPLAVDPRILVVAID
DRSLESLGRWPWPRSVHAELLDRLAAAGARSVLLDVIFSEPSSNPDSDRQLARSLCRAGNVLLPLLRESVPR
YGEPPREIPPTAPLAGCAAGIGHINVEADSDGTVRSVYLREGPLGQPRPLLAWQAFADAGAMPMPGLDDMRN
LPGWQRDHAIRIPFIGADAGFPSVPYVSVLRGEVPDSLLRDRLVLVGATAPGLGDRYVTPLSASLGTTPGVE
IQANILNGLLQQRTAVDLQPWLAALLSAASVALLLGLMLFRSRHALLLTLACAALALGLSWALLLNGWWWSP
LASLVGLLLAYLIWSWRRLNAVLAYFGWELARLDREPKVLPERASPPRAGNDPLQNRIAALEQAVSRTRDSR
RFMADGLEGLPVATLICDPQGQILLANRKARDLFGGELRGAELRQCLAELGHPSLAGGARPTLETLEAIEFR
DHRERDLRLDLARLLPVESETAIGWLVSLIDLSAERDAERQRATLLRFLSHDLRAPHSAILALLDVRPAEDE
AGQQVYRQIEQQVRRALGLTDAFVQLAKAESDAYRFEACMFTMLAMDAADQLWPLAQQKDIDLRRDWDDEQE
PMVWADPGLLTRALFNLLENAVKYSPAGTVVSLSIRLEGDWLSCRIVDQGKGIAAAELPRLFSQYQRFASAE
GSTGLGLGLAMVKTVIDRHGGRIGCQSQVGQGTTFEIRLPLLKGEE*
AnnotationID:233GeneID:223
AnnotatorUID: urbach
Modification Date/Time: 2004-10-05 16:04:54
Gene Name:
Confidence Code:3
GeneProduct:probable two-component sensor
Cell Localization:(4) Inner membrane protein
Synonyms:PA4036
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4252,pfam05226
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|13500 COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms]
Length = 400
Score =  260 bits (665), Expect = 1e-69
Identities = 144/396 (36%), Positives = 186/396 (46%), Gaps = 38/396 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:449




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17591




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:223
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
389
                           PA4036_tr
                           translation of PA4036
                           766
                           99.60
                           99.60
                           0
                           3893.0
     

     
     
22472
                           gb|AAG07423.1|AE004820_8
                           (AE004820) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           766
                           99.60
                           99.60
                           0
                           3893.0
     

     
     
22473
                           gb|AAG30827.1|AF286536_4
                           (AF286536) sensor kinase-like protein [Pseudomonas fluorescens]
                           766
                           6.26
                           7.96
                           682
                           261.0
     

     






      

          
GC ORFID: 43225How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4036Glimmer Score: 

          
Start: 3944258Stop: 3946558

          
Length: 2301


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4036 translation of PA4036Homolog Bit Score 1504.0

          
Other Homologs:  t_PA4036 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGGCGCTCGACCGCCAGGACGAGCCCAGCCAGGCGCAGCGGCTGTTCCGCGGCCTGGTGCGCGAATGG 
CTGCTGGTCAGCCTGCTGCTCCTTCCGCTCACCGCCCTGCTTTCGCTGAGCAGCGGCCTGCCGCTGAACAAC 
CTGCTCTACGACCGCCTGCGCAACCTCACCCCGCTGGCCGTCGATCCGCGCATCCTCGTCGTCGCCATCGAC 
GACCGTAGCCTGGAAAGCCTCGGTCGTTGGCCCTGGCCGCGCAGCGTCCACGCCGAGCTGCTGGATCGCCTG 
GCCGCCGCCGGCGCACGCAGCGTACTGCTCGACGTGATCTTCAGCGAACCCTCCTCCAATCCGGACAGCGAC 
CGCCAGTTGGCAAGATCGCTGTGCCGGGCCGGCAACGTCCTCCTGCCACTGCTGCGCGAAAGCGTGCCGCGC 
TACGGCGAACCGCCACGGGAGATACCGCCGACCGCGCCGCTGGCCGGCTGCGCCGCCGGCATCGGGCATATC 
AACGTCGAAGCGGACAGCGACGGCACGGTGCGCAGCGTCTACCTGCGCGAAGGACCGCTCGGCCAGCCGCGC 
CCGCTGCTCGCCTGGCAAGCATTCGCCGATGCCGGCGCCATGCCCATGCCCGGCCTCGACGACATGCGCAAC 
CTGCCCGGCTGGCAGCGTGACCACGCCATCCGCATTCCCTTCATCGGTGCCGACGCGGGCTTCCCCAGCGTG 
CCCTACGTCAGCGTGTTGCGCGGCGAGGTGCCGGACAGCCTGCTGCGCGACCGCCTGGTCCTGGTCGGCGCC 
ACCGCGCCGGGCCTCGGCGACCGCTATGTCACCCCGCTGTCGGCCAGCCTCGGCACCACGCCGGGGGTGGAG 
ATCCAGGCCAACATCCTCAACGGCCTGTTGCAGCAGCGCACCGCCGTCGACCTGCAACCCTGGCTCGCCGCC 
CTGCTCTCCGCCGCCAGCGTAGCGCTGCTGCTCGGCCTGATGCTGTTCCGCTCGCGCCACGCCTTGCTCCTC 
ACCCTGGCCTGCGCGGCCCTGGCCCTGGGTCTTTCCTGGGCGCTGCTGCTCAACGGCTGGTGGTGGTCACCG 
CTGGCCAGCCTGGTCGGCCTGCTGCTGGCCTACCTGATCTGGAGCTGGCGCCGGCTGAACGCGGTGCTCGCC 
TACTTCGGCTGGGAACTGGCGCGCCTCGACCGCGAGCCCAAGGTGCTGCCCGAGCGGGCCAGCCCCCCGCGC 
GCCGGCAACGATCCATTGCAGAACCGCATCGCCGCCCTGGAGCAGGCGGTCAGCCGCACCCGCGACAGCCGG 
CGGTTCATGGCCGACGGCCTGGAAGGCCTGCCGGTGGCGACCCTGATCTGCGACCCGCAGGGGCAGATCCTG 
CTGGCCAACCGCAAGGCACGCGACCTGTTCGGCGGCGAGCTGCGCGGCGCCGAACTGCGCCAGTGCCTGGCC 
GAACTCGGCCATCCGAGCCTCGCCGGCGGCGCCCGCCCAACGCTGGAAACCCTGGAAGCCATCGAGTTCCGC 
GACCATCGGGAACGCGACCTGCGCCTCGACCTGGCGCGCCTGCTGCCGGTCGAAAGCGAAACCGCCATCGGC 
TGGCTGGTGAGCCTGATCGACCTGAGCGCCGAACGCGATGCCGAGCGCCAGCGCGCCACCCTCCTGCGCTTC 
CTCTCCCACGACCTGCGCGCGCCGCACTCGGCGATCCTCGCCCTGCTCGACGTTCGCCCCGCCGAGGACGAA 
GCCGGCCAGCAGGTCTACCGACAGATAGAGCAGCAGGTCCGTCGCGCCCTGGGCCTGACCGACGCCTTCGTG 
CAACTGGCCAAGGCCGAATCCGACGCCTACCGCTTCGAAGCGTGCATGTTCACCATGTTGGCGATGGACGCC 
GCCGACCAGCTCTGGCCCCTCGCGCAACAGAAGGACATCGACCTGCGGCGCGACTGGGACGACGAGCAGGAA 
CCGATGGTCTGGGCCGACCCCGGCCTGCTCACGCGCGCGCTGTTCAACCTGCTGGAGAATGCGGTCAAGTAC 
AGCCCGGCGGGGACCGTCGTCAGCCTGAGCATCCGCCTCGAAGGCGACTGGCTGAGCTGCCGGATCGTCGAC 
CAGGGCAAAGGTATCGCGGCCGCCGAACTACCGCGCCTGTTCAGCCAGTACCAGCGCTTCGCTTCCGCCGAG 
GGCAGCACCGGCCTGGGCCTGGGGCTGGCCATGGTCAAGACGGTGATCGACCGGCACGGCGGCAGGATCGGT 
TGCCAGAGCCAGGTTGGCCAGGGCACCACTTTCGAGATTCGCCTTCCGCTGCTGAAAGGCGAGGAATAA