ViewGene
Locus Name:
GeneID:
Location:

GeneID:2228
TrivialName: PA14_57640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57640
PAO1 Ortholog Locus:PA4437
Sequence Length:963
Protein Length:320
Start: 5133361
Stop: 5134323
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07825.1|AE004858_3 (AE004858) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 319/320 (99%), Positives = 319/320 (99%)
Sequence:
ATGCGCCTTTATCTGCTCGCCTTCCTGGCCCTCTTCGGTATGAATGCTATGGCCGCCGACAACTGGAAAGCC
TTCCCCTACGACCAGAGCGCCTATGACTATCCAGGCGACAAGTTGAAGGAAGCCTGGCCGCGCCTGACCCGC
GGCTTCGGCGACTATCCCTATCCGGACGCCGACTGGGTGGTGAACATGGCGACCGCCCATCCGGATGCCCTG
GAAAAGACCGTGAAGGCCGGCACCGGCTTCACCGGCAAGCCGGAAGAGGCCGCGCAATATGCGGCGCGCCTG
CAGGATGTCTGGCGCCTGCTGTTCCGCGGCGACTACGCCAAGGCCAAGGAGCAGGGACTGGCTCTGGGAGTC
GGCGGCCAGGTACCGGCGATGTTCGCCCAGGTGCTCTACGCCATGTTCCTGGCTCCCGACCAGGCGGAGAAA
CAGCGCCTGCTCGAAGAGGTCATCGACTACACCGAACAGGCCGGCCCGCTGGTCAAGGCCGATATCGTCGCC
CAGTTCGGCAGCGTCTACGCCAAGGCGCGCCTGGCCGAGGAGCTATCGGTACCGGTAGTGCTCAAGCGCGGC
TATACCAGCGAGATACCCAAGGAACTGGACGCCCTCCTGGCCAGGCAACCCAACCAGCCGTTCGCCCTGGCG
CTCTACGGCGGCTACGAGGCGGGAGTGATCCGCAAGGTCGGCAAGCTGGTCGGCAAGATGACCTACGGGGTC
AGCGCCGACAAGATGGAACAGTACTTCGCCCGCTCCTTCCGCCAGGCCAACGACCTGCCGATCGGCCACTAC
GAGTACGCCAACGCGCTGACCTACGTATACGGCGACGACGAGCGGGAGAAGGCCATCGCCCAACTGAAGCAG
GCCGTGGCGATCAAGCCGATCAACGCCATGGAAGCCCTCGAAGTGGCCCATGCGAAGAAGCTCCTCGCCGGC
TTCGAGCAGAACACCGCGCAACGCTGA
Translation:
MRLYLLAFLALFGMNAMAADNWKAFPYDQSAYDYPGDKLKEAWPRLTRGFGDYPYPDADWVVNMATAHPDAL
EKTVKAGTGFTGKPEEAAQYAARLQDVWRLLFRGDYAKAKEQGLALGVGGQVPAMFAQVLYAMFLAPDQAEK
QRLLEEVIDYTEQAGPLVKADIVAQFGSVYAKARLAEELSVPVVLKRGYTSEIPKELDALLARQPNQPFALA
LYGGYEAGVIRKVGKLVGKMTYGVSADKMEQYFARSFRQANDLPIGHYEYANALTYVYGDDEREKAIAQLKQ
AVAIKPINAMEALEVAHAKKLLAGFEQNTAQR*
AnnotationID:2236GeneID:2228
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 21:09:33
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4437
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:4459




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21605




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2228
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3784
                           PA4437_tr
                           translation of PA4437
                           320
                           99.68
                           99.68
                           0
                           1642.0
     

     
     
116659
                           gb|AAG07825.1|AE004858_3
                           (AE004858) hypothetical protein PA4437 [Pseudomonas aeruginosa PAO1]
                           320
                           99.68
                           99.68
                           0
                           1642.0
     

     






      

          
GC ORFID: 45230How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4437Glimmer Score: 

          
Start: 4397040Stop: 4398002

          
Length: 963


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4437 translation of PA4437Homolog Bit Score 637.0

          
Other Homologs:  t_PA4437 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTTTATCTGCTCGCCTTCCTGGCCCTCTTCGGTATGAATGCTATGGCCGCCGACAACTGGAAAGCC 
TTCCCCTACGACCAGAGCGCCTATGACTATCCAGGCGACAAGTTGAAGGAAGCCTGGCCGCGCCTGACCCGC 
GGCTTCGGCGACTATCCCTATCCGGACGCCGACTGGGTGGTGAACATGGCGACCGCCCATCCGGATGCCCTG 
GAAAAGACCGTGAAGGCCGGCACCGGCTTCACCGGCAAGCCGGAAGAGGCCGCGCAATATGCGGCGCGCCTG 
CAGGATGTCTGGCGCCTGCTGTTCCGCGGCGACTACGCCAAGGCCAAGGAGCAGGGACTGGCTCTGGGAGTC 
GGCGGCCAGGTACCGGCGATGTTCGCCCAGGTGCTCTACGCCATGTTCCTGGCTCCCGACCAGGCGGAGAAA 
CAGCGCCTGCTCGAAGAGGTCATCGACTACACCGAACAGGCCGGCCCGCTGGTCAAGGCCGATATCGTCGCC 
CAGTTCGGCAGCGTCTACGCCAAGGCGCGCCTGGCCGAGGAGCTATCGGTACCGGTAGTGCTCAAGCGCGGC 
TATACCAGCGAGATACCCAAGGAACTGGACGCCCTCCTGGCCAGGCAACCCAACCAGCCGTTCGCCCTGGCG 
CTCTACGGCGGCTACGAGGCGGGAGTGATCCGCAAGGTCGGCAAGCTGGTCGGCAAGATGACCTACGGGGTC 
AGCGCCGACAAGATGGAACAGTACTTCGCCCGCTCCTTCCGCCAGGCCAACGACCTGCCGATCGGCCACTAC 
GAGTACGCCAACGCGCTGACCTACGTATACGGCGACGACGAGCGGGAGAAGGCCATCGCCCAACTGAAGCAG 
GCCGTGGCGATCAAGCCGATCAACGCCATGGAAGCCCTCGAAGTGGCCCATGCGAAGAAGCTCCTCGCCGGC 
TTCGAGCAGAACACCGCGCAACGCTGA