ViewGene
Locus Name:
GeneID:
Location:

GeneID:2227
TrivialName: PA14_36700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36700
PAO1 Ortholog Locus:PA2154
Sequence Length:996
Protein Length:331
Start: 3268789
Stop: 3269784
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05542.1|AE004642_9 (AE004642) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 322/331 (97%), Positives = 323/331 (97%)
Sequence:
ATGAACGGCGGCGGTCACGCAACTGCCTCGGCGGCGCCACGCCGCGCTCACTGGCGCTGGCTGCGCAGGCTA
CTGACCCTGGCGTTCTTCGTGCTGGTCCCGGTGCTGCTGTTCCTCCTGGTGAAGAATCTCGACTGGCAGGAA
GTCCGCCACGCCCTCGGCGAGTATCGCCCCGCGACCCTGTTCCTCGGACTGCTGCTGGCGGCCGCCGGCTAT
ACGGTGTTCAGCAGTTTCGACCTGCTCAGCCGCTACTACATCGGCCACTCGCTGCCCAAGCGGCGGGTCTTC
ACCGTGGCCTTCGTGTGCAATGCGTTCAACCTCAACCTGAGTTCCTGGGTCGGCGCCGTGGCGCTGCGCTAT
CGCCTGTACAGCCGGCTCGGCCTGGGCATCGCCGACATCACCCGGATCCTCACCTTCAGCCTGGTGACCAAT
TGGTTCGGCTACCTGCTGCTCGCCGGCATCCTGTTCAGCTGCGGCCTGCCGGCCTTGCCGCCGGGCTGGAAG
CTCGGCAGCGACGGCCTGCGCCTGATCGGCGCCCTGCTCCTGGCGCTGGCCGCCGGCTACCTGCTGGCCTGC
CGTTTCGCCCGACGCCGCGCCTGGGGCTGGCGCGAGCATCGGCTGACCCTGCCGTCCTGGCGGCTGGCGGCC
CTTCAAGGCCTGCTCGGAGCGAGCAACTGGTCGCTGATGGCGTTGCTGCTGTACAGCCTGCTGCCGCACGGC
GTGGATTACCCGAGCGTCCTGGCGATCCTCCTGATCAGCAGCATCGCCGGGGTCATCACCCATATCCCGGCC
GGGCTCGGGGTGCTCGAAGCGGTGTTCATCGCCCTGCTCCAGGGGCGCCTGTCCCAGGGCGTGCTGCTGGCC
GCGTTGATCGGCTACCGGGTGCTGTATTTCCTCCTACCCCTGGCGCTGGCCTGCGTGGTCTACCTGCTGTTG
GAGCGCCGGGCGATCCGCCTGCGCCGCAAACAGCGCCGCCTGCGCCAGGGCCAGGCCTGA
Translation:
MNGGGHATASAAPRRAHWRWLRRLLTLAFFVLVPVLLFLLVKNLDWQEVRHALGEYRPATLFLGLLLAAAGY
TVFSSFDLLSRYYIGHSLPKRRVFTVAFVCNAFNLNLSSWVGAVALRYRLYSRLGLGIADITRILTFSLVTN
WFGYLLLAGILFSCGLPALPPGWKLGSDGLRLIGALLLALAAGYLLACRFARRRAWGWREHRLTLPSWRLAA
LQGLLGASNWSLMALLLYSLLPHGVDYPSVLAILLISSIAGVITHIPAGLGVLEAVFIALLQGRLSQGVLLA
ALIGYRVLYFLLPLALACVVYLLLERRAIRLRRKQRRLRQGQA*
AnnotationID:2235GeneID:2227
AnnotatorUID: danlee
Modification Date/Time: 2006-03-16 14:02:20
Gene Name:
Confidence Code:4
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA2154
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0392
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68870.1|AE016519_3 (AE016786) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 317

 Score =  396 bits (1018), Expect = e-110
 Identities = 193/311 (62%), Positives = 241/311 (77%), Gaps = 1/311 (0%)

>gb|AAN79344.1|AE016757_248 (AE016757) Hypothetical protein ybhN [Escherichia coli CFT073]
          Length = 318

 Score =  300 bits (769), Expect = 6e-81
 Identities = 150/306 (49%), Positives = 205/306 (66%), Gaps = 1/306 (0%)

>gb|AAO69697.1| (AE016841) putative membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 320

 Score =  298 bits (762), Expect = 4e-80
 Identities = 151/315 (47%), Positives = 204/315 (64%), Gaps = 1/315 (0%)








 
Structural Features:
COG0392, COG0392, Predicted integral membrane protein
CD-Length = 322 residues,  98.8% aligned
Score =  114 bits (287), Expect = 1e-26
Identities = 112/318 (35%), Positives = 163/318 (51%), Gaps = 7/318 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4457




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21603




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32574




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2227_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2227
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3783
                           PA2154_tr
                           translation of PA2154
                           331
                           97.28
                           97.58
                           0
                           1644.0
     

     
     
116644
                           gb|AAG05542.1|AE004642_9
                           (AE004642) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           331
                           97.28
                           97.58
                           0
                           1644.0
     

     
     
116645
                           gb|AAN68870.1|AE016519_3
                           (AE016786) membrane protein, putative [Pseudomonas putida KT2440]
                           332
                           58.13
                           72.89
                           16
                           1014.0
     

     
     
116646
                           gb|AAO56977.1|
                           (AE016868) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           337
                           55.78
                           70.91
                           11
                           959.0
     

     
     
116656
                           emb|CAD05258.1|
                           (AL627268) putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi]
                           332
                           46.08
                           62.34
                           13
                           761.0
     

     






      

          
GC ORFID: 45229How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2154Glimmer Score: 

          
Start: 1685125Stop: 1684130

          
Length: 996


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2154 translation of PA2154Homolog Bit Score 637.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3034 (ORF: BLASTX 366.0), t_PA2154 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGGCGGCGGTCACGCAACTGCCTCGGCGGCGCCACGCCGCGCTCACTGGCGCTGGCTGCGCAGGCTA 
CTGACCCTGGCGTTCTTCGTGCTGGTCCCGGTGCTGCTGTTCCTCCTGGTGAAGAATCTCGACTGGCAGGAA 
GTCCGCCACGCCCTCGGCGAGTATCGCCCCGCGACCCTGTTCCTCGGACTGCTGCTGGCGGCCGCCGGCTAT 
ACGGTGTTCAGCAGTTTCGACCTGCTCAGCCGCTACTACATCGGCCACTCGCTGCCCAAGCGGCGGGTCTTC 
ACCGTGGCCTTCGTGTGCAATGCGTTCAACCTCAACCTGAGTTCCTGGGTCGGCGCCGTGGCGCTGCGCTAT 
CGCCTGTACAGCCGGCTCGGCCTGGGCATCGCCGACATCACCCGGATCCTCACCTTCAGCCTGGTGACCAAT 
TGGTTCGGCTACCTGCTGCTCGCCGGCATCCTGTTCAGCTGCGGCCTGCCGGCCTTGCCGCCGGGCTGGAAG 
CTCGGCAGCGACGGCCTGCGCCTGATCGGCGCCCTGCTCCTGGCGCTGGCCGCCGGCTACCTGCTGGCCTGC 
CGTTTCGCCCGACGCCGCGCCTGGGGCTGGCGCGAGCATCGGCTGACCCTGCCGTCCTGGCGGCTGGCGGCC 
CTTCAAGGCCTGCTCGGAGCGAGCAACTGGTCGCTGATGGCGTTGCTGCTGTACAGCCTGCTGCCGCACGGC 
GTGGATTACCCGAGCGTCCTGGCGATCCTCCTGATCAGCAGCATCGCCGGGGTCATCACCCATATCCCGGCC 
GGGCTCGGGGTGCTCGAAGCGGTGTTCATCGCCCTGCTCCAGGGGCGCCTGTCCCAGGGCGTGCTGCTGGCC 
GCGTTGATCGGCTACCGGGTGCTGTATTTCCTCCTACCCCTGGCGCTGGCCTGCGTGGTCTACCTGCTGTTG 
GAGCGCCGGGCGATCCGCCTGCGCCGCAAACAGCGCCGCCTGCGCCAGGGCCAGGCCTGA