ViewGene
Locus Name:
GeneID:
Location:

GeneID:2224
TrivialName: PA14_58470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58470
PAO1 Ortholog Locus:PA4505
Sequence Length:975
Protein Length:324
Start: 5207642
Stop: 5208616
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07893.1|AE004864_5 (AE004864) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 323/324 (99%), Positives = 323/324 (99%)
Sequence:
ATGAGCCTCCTCGATATCAAGAACCTCAGCGTGCGCTTCGGCGACACCACCGCCGTGCCCGTGGTCGACGGC
CTCGACCTGAGCGTCGACAAGGGCGAGGTGCTGGCCATCGTCGGCGAGTCCGGCTCCGGCAAGTCGGTGACC
ATGATGGCCCTGATGGGCCTGATCGACGCCCCCGGCTGGGTGTCCGCCGATCACCTGCGCTTCGACGGCCAC
GACATGCTCACCCTCAAGGGCCGCCAGCGCCGGCGCATCGTCGGCAAGGACATGGCGATGGTCTTCCAGGAC
CCGATGACCGCCCTCAACCCCAGCTACACCGTCGGCTACCAGATCGAGGAAGTCCTCCGCCTGCATCTCGGC
CTGCGCGGCAAGGCCCTGCGCCAGCGCGCCCTGGAACTGCTCGAACGGGTCGAGATCCCGGCCGCCGCCAGC
CGTCTCGACGCCTACCCGCACCAGCTCTCCGGCGGCATGAGCCAGCGCGTGGCGATCGCCATGGCCATCGCT
GCCGAGCCCAAGCTGCTGATCGCCGACGAGCCGACCACCGCCCTCGACGTGACCATCCAGGCGCAGATCATG
GAGCTGCTGCTGAACCTGCAGCGCGACCAGGACATGGCGCTGATCCTGATCACCCACGATCTCGCCGTGGTC
GCCGAGACCGCCCAGCGCGTCTGCGTGATGTACGCCGGCGAAGCGGTGGAGATCGGCGGCGTGCCGGCGCTG
TTCGACCGCCCGACCCATCCCTACACCGAGGCGCTGATCAAGGCGATCCCCGAGCACTGTGCCGGCGAAGCC
CGCCTGGCCACCCTGCCCGGCATCGTTCCGGGGCGCTACGACCGCCCGCGCGGTTGCCTGCTGTCGCCACGC
TGTCCCTATGCCCAGGAGCATTGCCGCCAGGAGCGGCCGGCCCTGGAAGCGCACGAGCGCGGCGCGGTGCGC
TGCTTCTATCCGTTGAACCTGCTGAACGAGGTGGCCTGA
Translation:
MSLLDIKNLSVRFGDTTAVPVVDGLDLSVDKGEVLAIVGESGSGKSVTMMALMGLIDAPGWVSADHLRFDGH
DMLTLKGRQRRRIVGKDMAMVFQDPMTALNPSYTVGYQIEEVLRLHLGLRGKALRQRALELLERVEIPAAAS
RLDAYPHQLSGGMSQRVAIAMAIAAEPKLLIADEPTTALDVTIQAQIMELLLNLQRDQDMALILITHDLAVV
AETAQRVCVMYAGEAVEIGGVPALFDRPTHPYTEALIKAIPEHCAGEARLATLPGIVPGRYDRPRGCLLSPR
CPYAQEHCRQERPALEAHERGAVRCFYPLNLLNEVA*
AnnotationID:2232GeneID:2224
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 07:07:25
Gene Name:dppD
Confidence Code:3
GeneProduct:putative dipeptide ABC transporter
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0444,COG4608,COG4170
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66504.1|AE016279_7 (AE016777) dipeptide ABC transporter, ATP-binding protein
           [Pseudomonas putida KT2440]
          Length = 322

 Score =  516 bits (1329), Expect = e-146
 Identities = 258/318 (81%), Positives = 284/318 (89%)


>gb|AAA95974.1| (U17295) DppD [Haemophilus influenzae]
          Length = 330

 Score =  389 bits (998), Expect = e-107
 Identities = 197/319 (61%), Positives = 244/319 (76%), Gaps = 1/319 (0%)






 
Structural Features:
COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, 
ATPase component 
[Amino acid transport and metabolism / 
Inorganic ion transport and metabolism]
CD-Length = 316 residues,  99.7% aligned
Score =  416 bits (1072), Expect = 3e-117
Identities = 174/318 (54%), Positives = 213/318 (66%), Gaps = 7/318 (2%)

COG4608, AppF, ABC-type oligopeptide transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 309 residues,  99.7% aligned
Score =  279 bits (716), Expect = 5e-76
Identities = 135/316 (42%), Positives = 189/316 (59%), Gaps = 15/316 (4%)

COG4170, SapD, ABC-type antimicrobial peptide transport system, 
ATPase component [Defense mechanisms]
CD-Length = 330 residues,  99.1% aligned
Score =  268 bits (686), Expect = 1e-72
Identities = 133/329 (40%), Positives = 206/329 (62%), Gaps = 12/329 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4451




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21597




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31549




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2224_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2224
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3777
                           PA4505_tr
                           translation of PA4505
                           324
                           99.69
                           99.69
                           0
                           1646.0
     

     
     
116038
                           gb|AAG07893.1|AE004864_5
                           (AE004864) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           324
                           99.69
                           99.69
                           0
                           1646.0
     

     
     
116039
                           gb|AAN66504.1|AE016279_7
                           (AE016777) dipeptide ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           324
                           80.55
                           88.58
                           2
                           1331.0
     

     
     
116040
                           gb|AAO58012.1|
                           (AE016872) dipeptide ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           324
                           79.62
                           88.58
                           2
                           1320.0
     

     
     
116041
                           gb|AAQ58775.1|
                           (AE016913) probable ATP-binding component of ABC transporter [Chromobacterium violaceum ATCC 12472]
                           327
                           71.55
                           82.87
                           4
                           1189.0
     

     






      

          
GC ORFID: 45226How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4505Glimmer Score: 

          
Start: 4471320Stop: 4472294

          
Length: 975


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4505 translation of PA4505Homolog Bit Score 638.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5619 (ORF: BLASTX 515.0), psyr_15may02_Scaffold2_revised_gene3192 (ORF: BLASTX 301.0), psyr_15may02_Scaffold1_revised_gene1327 (ORF: BLASTX 271.0), psyr_15may02_Scaffold1_revised_gene232 (ORF: BLASTX 270.0), psyr_15may02_Scaffold4_revised_gene5459 (ORF: BLASTX 232.0), psyr_15may02_Scaffold4_revised_gene5460 (ORF: BLASTX 197.0), t_PA4505 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTCCTCGATATCAAGAACCTCAGCGTGCGCTTCGGCGACACCACCGCCGTGCCCGTGGTCGACGGC 
CTCGACCTGAGCGTCGACAAGGGCGAGGTGCTGGCCATCGTCGGCGAGTCCGGCTCCGGCAAGTCGGTGACC 
ATGATGGCCCTGATGGGCCTGATCGACGCCCCCGGCTGGGTGTCCGCCGATCACCTGCGCTTCGACGGCCAC 
GACATGCTCACCCTCAAGGGCCGCCAGCGCCGGCGCATCGTCGGCAAGGACATGGCGATGGTCTTCCAGGAC 
CCGATGACCGCCCTCAACCCCAGCTACACCGTCGGCTACCAGATCGAGGAAGTCCTCCGCCTGCATCTCGGC 
CTGCGCGGCAAGGCCCTGCGCCAGCGCGCCCTGGAACTGCTCGAACGGGTCGAGATCCCGGCCGCCGCCAGC 
CGTCTCGACGCCTACCCGCACCAGCTCTCCGGCGGCATGAGCCAGCGCGTGGCGATCGCCATGGCCATCGCT 
GCCGAGCCCAAGCTGCTGATCGCCGACGAGCCGACCACCGCCCTCGACGTGACCATCCAGGCGCAGATCATG 
GAGCTGCTGCTGAACCTGCAGCGCGACCAGGACATGGCGCTGATCCTGATCACCCACGATCTCGCCGTGGTC 
GCCGAGACCGCCCAGCGCGTCTGCGTGATGTACGCCGGCGAAGCGGTGGAGATCGGCGGCGTGCCGGCGCTG 
TTCGACCGCCCGACCCATCCCTACACCGAGGCGCTGATCAAGGCGATCCCCGAGCACTGTGCCGGCGAAGCC 
CGCCTGGCCACCCTGCCCGGCATCGTTCCGGGGCGCTACGACCGCCCGCGCGGTTGCCTGCTGTCGCCACGC 
TGTCCCTATGCCCAGGAGCATTGCCGCCAGGAGCGGCCGGCCCTGGAAGCGCACGAGCGCGGCGCGGTGCGC 
TGCTTCTATCCGTTGAACCTGCTGAACGAGGTGGCCTGA