ViewGene

Locus Name:
GeneID:
Location:

GeneID:2223
TrivialName: PA14_10160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10160
PAO1 Ortholog Locus:PA4160
Sequence Length:1023
Protein Length:340
Start: 872487
Stop: 871465
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07547.1|AE004832_7 (AE004832) ferric enterobactin transport protein FepD [Pseudomonas aeruginosa PAO1]
Identities = 338/340 (99%), Positives = 338/340 (99%)
Sequence:
ATGCAGGCGTCCCCGATGCGCCGCCGGCGCCTGCGCGCCTGGGGCCTGCTCGCCGGCGCGCTGCTGCTCGCG
CTGGCGGCCCTGGCCAGCCTGGCGCTGGGCTCGCGGCCGGTGCCTCTGGCGGTCACCCTGGACGCCCTGCAA
GCCGTCGATCCGCACGATGATCGCCACCTGGTGGTACGCGAACTGCGCCTGCCACGCACCCTGGTGGCGCTG
CTGGCCGGCGCGGCGCTGGGAGTGGCCGGCGCGCTGATGCAGGCGCTGACGCGCAATCCGCTGGCCGAACCC
GGCCTGCTGGGGATCAACGCCGGCGCGGCGCTGGCGGTGATCGTCGGGGTCGCGCTGTTCGACCTGGCGAGC
ATGGGCCAGTACCTCGGTTGCGCCTTCCTCGGCGCCGGCCTGGCCGGCATCGCCGTATTCCTTCTCGGCCAG
GCCCGCGAGACCGGCACCAACCCGGTGCGCCTGGTGCTGGCGGGTGCCGGCTTGTCGGTGATGCTCGCCTCG
CTGACCGGGATCATCGTGCTGAACGCCCCGCCGGAAGTCTTCGACCGCTTCCGCCACTGGGCCGCCGGCTCG
CTTTCCGGCAGCGGCTTCGCCCTGCTCGGATGGCCGGGTCTGGCCATCGGCGCCGGGCTGGCCGCCGCCTTC
GCCCTCGCCGCCAGGCTCAATGCCCTGGCCCTGGGCCAGGAGATCGGCCAGGCGCTCGGCGTCGACCTGCGC
CTGACCTGGTTGCTCGCCTGCCTGGCGGTGATGCTGCTGGCCGGCGCGGCGACCGCCCTGGCCGGGCCGATC
GCCTTCGTCGGCCTGGTCGCCCCGCACCTCGCGCGACTGCTGGCCGGACCGGACCAGCGCTGGATCCTGTCT
TTCTCGGCGCTGATCGCCGCCGGCCTGCTGCTCGGCGCCGACATCCTCGGGCGGCTGCTGGCGGCGCCGGCG
GAGATCGCCGCCGGAATCGTCGCGTTGCTGCTCGGCGGACCGGCCTTCATCGTCCTGGTCAGGCGCTTCCGC
CTGAGCCGCCTGTGA
Translation:
MQASPMRRRRLRAWGLLAGALLLALAALASLALGSRPVPLAVTLDALQAVDPHDDRHLVVRELRLPRTLVAL
LAGAALGVAGALMQALTRNPLAEPGLLGINAGAALAVIVGVALFDLASMGQYLGCAFLGAGLAGIAVFLLGQ
ARETGTNPVRLVLAGAGLSVMLASLTGIIVLNAPPEVFDRFRHWAAGSLSGSGFALLGWPGLAIGAGLAAAF
ALAARLNALALGQEIGQALGVDLRLTWLLACLAVMLLAGAATALAGPIAFVGLVAPHLARLLAGPDQRWILS
FSALIAAGLLLGADILGRLLAAPAEIAAGIVALLLGGPAFIVLVRRFRLSRL*
AnnotationID:2231GeneID:2223
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 06:06:58
Gene Name:fepD
Confidence Code:2
GeneProduct:ferric enterobactin transport protein FepD
Cell Localization:()
Synonyms:phuG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01032,COG0609
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAK95843.1| (AY042783) putative cytoplasmic permease PhuG [Photorhabdus
           luminescens]
          Length = 350

 Score =  311 bits (797), Expect = 4e-84
 Identities = 160/338 (47%), Positives = 238/338 (70%), Gaps = 3/338 (0%)

>gb|AAF93942.1| (AE004163) ferric vibriobactin ABC transporter, permease protein
           [Vibrio cholerae]
          Length = 350

 Score =  306 bits (785), Expect = 9e-83
 Identities = 164/326 (50%), Positives = 226/326 (69%), Gaps = 3/326 (0%)

>gb|AAD48881.1| (U52150) cytoplasmic membrane permease [Vibrio cholerae]
          Length = 350

 Score =  306 bits (785), Expect = 9e-83
 Identities = 164/326 (50%), Positives = 226/326 (69%), Gaps = 3/326 (0%)

Structural Features:
pfam01032, FecCD, FecCD transport family.
CD-Length = 301 residues, 100.0% aligned
Score =  201 bits (514), Expect = 7e-53
Identities = 135/303 (44%), Positives = 185/303 (61%), Gaps = 4/303 (1%)

COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component 
[Inorganic ion transport and metabolism]
CD-Length = 334 residues,  99.7% aligned
Score =  188 bits (478), Expect = 1e-48
Identities = 146/335 (43%), Positives = 203/335 (60%), Gaps = 6/335 (1%)
Genomic Context:
Comment:
ReferenceID:4449
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21595
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36901
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2223_cdd.html
URL:
ReferenceID:36997
Author/Investigator(s): Chenault SS, Earhart CF.
Title: Organization of genes encoding membrane proteins of the Escherichia coli ferrienterobactin permease.
PubMed: 1787794
MedLine:
Source:
Mol Microbiol. 1991 Jun;5(6):1405-13.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1787794
ReferenceID:37000
Author/Investigator(s): Shea CM, McIntosh MA.
Title: Nucleotide sequence and genetic organization of the ferric enterobactin transport system: homology to other periplasmic binding protein-dependent systems in Escherichia coli.
PubMed: 1838574
MedLine:
Source:
Mol Microbiol. 1991 Jun;5(6):1415-28.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1838574
Homologs By Global Alignment
Gene ID:2223

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3775 PA4160_tr translation of PA4160 340 99.41 99.41 0 1645.0
115988 gb|AAG07547.1|AE004832_7 (AE004832) ferric enterobactin transport protein FepD [Pseudomonas aeruginosa PAO1] 340 99.41 99.41 0 1645.0
115991 gb|AAD48881.1| (U52150) cytoplasmic membrane permease [Vibrio cholerae] 353 47.87 65.43 16 785.0
115990 gb|AAF93942.1| (AE004163) ferric vibriobactin ABC transporter, permease protein [Vibrio cholerae O1 biovar eltor str. N16961] 353 47.87 65.43 16 785.0
115998 gb|AAQ59908.1| (AE016917) enterobactin-iron transport system permease protein [Chromobacterium violaceum ATCC 12472] 349 45.84 60.45 20 650.0
GC ORFID: 45225How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4160Glimmer Score:
Start: 4081450Stop: 4082472
Length: 1023
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4160 translation of PA4160Homolog Bit Score 638.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1468 (ORF: BLASTX 223.0), psyr_15may02_Scaffold2_revised_gene3598 (ORF: BLASTX 197.0), t_PA4707 (ORF: BLASTX 181.0), t_PA4160 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGGCGTCCCCGATGCGCCGCCGGCGCCTGCGCGCCTGGGGCCTGCTCGCCGGCGCGCTGCTGCTCGCG
CTGGCGGCCCTGGCCAGCCTGGCGCTGGGCTCGCGGCCGGTGCCTCTGGCGGTCACCCTGGACGCCCTGCAA
GCCGTCGATCCGCACGATGATCGCCACCTGGTGGTACGCGAACTGCGCCTGCCACGCACCCTGGTGGCGCTG
CTGGCCGGCGCGGCGCTGGGAGTGGCCGGCGCGCTGATGCAGGCGCTGACGCGCAATCCGCTGGCCGAACCC
GGCCTGCTGGGGATCAACGCCGGCGCGGCGCTGGCGGTGATCGTCGGGGTCGCGCTGTTCGACCTGGCGAGC
ATGGGCCAGTACCTCGGTTGCGCCTTCCTCGGCGCCGGCCTGGCCGGCATCGCCGTATTCCTTCTCGGCCAG
GCCCGCGAGACCGGCACCAACCCGGTGCGCCTGGTGCTGGCGGGTGCCGGCTTGTCGGTGATGCTCGCCTCG
CTGACCGGGATCATCGTGCTGAACGCCCCGCCGGAAGTCTTCGACCGCTTCCGCCACTGGGCCGCCGGCTCG
CTTTCCGGCAGCGGCTTCGCCCTGCTCGGATGGCCGGGTCTGGCCATCGGCGCCGGGCTGGCCGCCGCCTTC
GCCCTCGCCGCCAGGCTCAATGCCCTGGCCCTGGGCCAGGAGATCGGCCAGGCGCTCGGCGTCGACCTGCGC
CTGACCTGGTTGCTCGCCTGCCTGGCGGTGATGCTGCTGGCCGGCGCGGCGACCGCCCTGGCCGGGCCGATC
GCCTTCGTCGGCCTGGTCGCCCCGCACCTCGCGCGACTGCTGGCCGGACCGGACCAGCGCTGGATCCTGTCT
TTCTCGGCGCTGATCGCCGCCGGCCTGCTGCTCGGCGCCGACATCCTCGGGCGGCTGCTGGCGGCGCCGGCG
GAGATCGCCGCCGGAATCGTCGCGTTGCTGCTCGGCGGACCGGCCTTCATCGTCCTGGTCAGGCGCTTCCGC
CTGAGCCGCCTGTGA