ViewGene

Locus Name:
GeneID:
Location:

GeneID:2221
TrivialName: PA14_18820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18820
PAO1 Ortholog Locus:PA3518
Sequence Length:987
Protein Length:328
Start: 1622352
Stop: 1623338
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06906.1|AE004772_4 (AE004772) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 326/328 (99%), Positives = 327/328 (99%)
Sequence:
ATGAATACCCGCAATTTTTCCCTGCCGCAGTTGCAGAACCTGCCCATCGATGAAGCACGCATCGTTGCCGAT
GCGCTGGCCGTCCACGCTACTTCCCGCCAGATCGATAGCGCCGCGAGCAAGCTGGCCGCGCTGGCCGAGGCA
GGGCTCAAGGGCGACCGCCAGGCCTATACCGCGTACCAGCAGTTGCTCTACGTCCTTTCGTTGAGCGACGAC
GTGGCGACCGCCCAGACCCGGCGTTGGCTGGCCCGGGCGATCTATCGCGTCGAAGAGCGTTTCATGCCCGCC
GCCGATCTTTCCAGGGCGCTGTCCGAGGAGGATTTCCAGAAGCGTCTCGAACAGGAAATCGCCGCGCAGTCC
CGCGAGCGGCACCCGATGTCGCAGTACGTGTTCTCCGGCTCGGCCTCCCGCGCGCAGCTCCAGGTGTTCCTC
CGTCACCAGTGGTTCCGCACCTTCCGCCTGTACCGCGATGCGGCCGATCTGTTGGTCAACCTGACCGATGTG
GACGAGGCCGCGGCGCTCGCGCGCTACCTCTATGGCGAGTTGGGCGAGGAAGACGAAAAGGGTTCGCATCCG
CGCCTGCTGGCCAAGCTGCTCGAAGCCATCGGCCTGGAGGCGGACTTCCAGGCCGTCTCGACGATGCCCGAG
GAAATCGCCTACCTGAACAATCGCGCCCGTGCCTTCCGGCATGCCGAGGTCGGTTGGGGGCTGGCGGTGTTC
TACATCACCGAACTGGTCGTGCCGGGGAACCACGAAAAGCTCTATCGGGCCCTGCTCCAGGCCGGCCTGAGC
GAGGACCAGGCGGAGTACTACAAGGTCCACATCAGCCTCGTACCGCCGCGGGCCAAGCGCGAATGGCAACTC
ATCGCGCGGCGGATTCCGGACGTGCAGTTCCAGAATGCGTTCCTGACCTCGCTATCGCAGCACTTCCGTGTG
GAAAGGGCCTATTACGACGCGATCTGGGAAGAGATGCAGAGCGTCAAGTGA
Translation:
MNTRNFSLPQLQNLPIDEARIVADALAVHATSRQIDSAASKLAALAEAGLKGDRQAYTAYQQLLYVLSLSDD
VATAQTRRWLARAIYRVEERFMPAADLSRALSEEDFQKRLEQEIAAQSRERHPMSQYVFSGSASRAQLQVFL
RHQWFRTFRLYRDAADLLVNLTDVDEAAALARYLYGELGEEDEKGSHPRLLAKLLEAIGLEADFQAVSTMPE
EIAYLNNRARAFRHAEVGWGLAVFYITELVVPGNHEKLYRALLQAGLSEDQAEYYKVHISLVPPRAKREWQL
IARRIPDVQFQNAFLTSLSQHFRVERAYYDAIWEEMQSVK*
AnnotationID:2229GeneID:2221
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 13:01:26
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3518
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:4445
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21591
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2221

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3772 PA3518_tr translation of PA3518 328 99.39 99.69 0 1646.0
115984 gb|AAG06906.1|AE004772_4 (AE004772) hypothetical protein PA3518 [Pseudomonas aeruginosa PAO1] 328 99.39 99.69 0 1646.0
GC ORFID: 45223How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3518Glimmer Score:
Start: 3331582Stop: 3330596
Length: 987
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3518 translation of PA3518Homolog Bit Score 638.0
Other Homologs: t_PA3518 (ORF: GLIMMER)
GC ORF Sequence
ATGAATACCCGCAATTTTTCCCTGCCGCAGTTGCAGAACCTGCCCATCGATGAAGCACGCATCGTTGCCGAT
GCGCTGGCCGTCCACGCTACTTCCCGCCAGATCGATAGCGCCGCGAGCAAGCTGGCCGCGCTGGCCGAGGCA
GGGCTCAAGGGCGACCGCCAGGCCTATACCGCGTACCAGCAGTTGCTCTACGTCCTTTCGTTGAGCGACGAC
GTGGCGACCGCCCAGACCCGGCGTTGGCTGGCCCGGGCGATCTATCGCGTCGAAGAGCGTTTCATGCCCGCC
GCCGATCTTTCCAGGGCGCTGTCCGAGGAGGATTTCCAGAAGCGTCTCGAACAGGAAATCGCCGCGCAGTCC
CGCGAGCGGCACCCGATGTCGCAGTACGTGTTCTCCGGCTCGGCCTCCCGCGCGCAGCTCCAGGTGTTCCTC
CGTCACCAGTGGTTCCGCACCTTCCGCCTGTACCGCGATGCGGCCGATCTGTTGGTCAACCTGACCGATGTG
GACGAGGCCGCGGCGCTCGCGCGCTACCTCTATGGCGAGTTGGGCGAGGAAGACGAAAAGGGTTCGCATCCG
CGCCTGCTGGCCAAGCTGCTCGAAGCCATCGGCCTGGAGGCGGACTTCCAGGCCGTCTCGACGATGCCCGAG
GAAATCGCCTACCTGAACAATCGCGCCCGTGCCTTCCGGCATGCCGAGGTCGGTTGGGGGCTGGCGGTGTTC
TACATCACCGAACTGGTCGTGCCGGGGAACCACGAAAAGCTCTATCGGGCCCTGCTCCAGGCCGGCCTGAGC
GAGGACCAGGCGGAGTACTACAAGGTCCACATCAGCCTCGTACCGCCGCGGGCCAAGCGCGAATGGCAACTC
ATCGCGCGGCGGATTCCGGACGTGCAGTTCCAGAATGCGTTCCTGACCTCGCTATCGCAGCACTTCCGTGTG
GAAAGGGCCTATTACGACGCGATCTGGGAAGAGATGCAGAGCGTCAAGTGA