ViewGene
Locus Name:
GeneID:
Location:

GeneID:2220
TrivialName: PA14_20000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20000
PAO1 Ortholog Locus:PA3409
Sequence Length:987
Protein Length:328
Start: 1720741
Stop: 1721727
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06797.1|AE004762_3 (AE004762) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
Identities = 326/328 (99%), Positives = 327/328 (99%)
Sequence:
GTGAACAGCCCCCAGGAACAACAGCAGATCCGCCAGCAGGCCGCCGAATGGGCGATCCGCCTGGACGGCGGC
GACCTCGACCGGTCCCGGCGCGAAGCGCTGGACGGCTGGCTGGCGGCCGACCCCCGGCACCCGGCCGCGCTG
GCGCTGGCGCAACGGACCTGGAAACAGCTGGGATCGCTGGCCGAACCGCGGACGATGGTTCAGACGCCGGTC
GCCAGCGCGCCGCGCCGCGCCGGGGGGCGGCGCAAGGGCTGGCGCGGCTGGGCCGCGGCGGCGGCGGTGCTG
CTGGCCCTGGGCAGCGCCTGGAACGAACGCGACGCCGGCGTGAGCTGGCTGGCCGACCACGCCACCGGCAAG
GGCGAGGTGCGCATCCTGCGGCTGGTGGATGGCAGCGAGGTCGAGCTGGACGCACAGAGCGCCATCGATGTC
GCCTACGACAGCCGCGAGCGACGGGTGCGCCTGCTCGAAGGCAGCGCGATCTTCCGCGCCGCCCCACGCGCG
GGCCGGGAGACCCGGCCCTTCGTGGTGGAAAGCGCCGGCGGCAGCACTCGCGCGCTGGGCACTCGGTTCCTG
GTCAGCCGCAACGACGACGGCAGCGTCCAGGTCGGGGTGCTCGAACACCGCGTCGCGGTGGCCCTGGCGCAT
CCGCGCACGGGGACCGTCGGGCGCCGCGAGCTGGGCGAGGGCGAGAGCCTGCGCTACAGCGCGGAGGGCGGC
GTCGAGGCGCCGCTGGGCGGTCGCCTCGACGACCTGACCAGTTGGCGGCGCGGCCTGCTGGTCTTCGACGAG
CAGCCGCTGGGCGAGGTGGTGGCGCGCCTCAATCGCTACCGGCCGGGGCATTTGCTGGTGGCTCCCGGTGCG
TTGGCGCAGCGGCGGGTCAGCGGGGTATTCCGGGTCGCCGACCTGGAGGCCTCGTTGCAGTCGATCAGCGAT
GAGCTGGGCGTGCGCAGCCTGGGCCTGGCGGGAGTGACGCTGCTGTACTGA
Translation:
MNSPQEQQQIRQQAAEWAIRLDGGDLDRSRREALDGWLAADPRHPAALALAQRTWKQLGSLAEPRTMVQTPV
ASAPRRAGGRRKGWRGWAAAAAVLLALGSAWNERDAGVSWLADHATGKGEVRILRLVDGSEVELDAQSAIDV
AYDSRERRVRLLEGSAIFRAAPRAGRETRPFVVESAGGSTRALGTRFLVSRNDDGSVQVGVLEHRVAVALAH
PRTGTVGRRELGEGESLRYSAEGGVEAPLGGRLDDLTSWRRGLLVFDEQPLGEVVARLNRYRPGHLLVAPGA
LAQRRVSGVFRVADLEASLQSISDELGVRSLGLAGVTLLY*
AnnotationID:2228GeneID:2220
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 11:11:38
Gene Name:
Confidence Code:3
GeneProduct:putative Fe2+-dicitrate sensor, membrane component
Cell Localization:()
Synonyms:PA3409
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04773,COG3712
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53989.1| (AE016857) regulatory protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 330

 Score =  156 bits (395), Expect = 1e-37
 Identities = 113/329 (34%), Positives = 171/329 (51%), Gaps = 36/329 (10%)

>gb|AAL45998.1| (AE008953) transmembrane sensor [Agrobacterium tumefaciens str. C58
           (U. Washington)]
          Length = 311

 Score =  154 bits (389), Expect = 7e-37
 Identities = 107/321 (33%), Positives = 159/321 (49%), Gaps = 19/321 (5%)






 
Structural Features:
pfam04773, FecR, FecR protein. FecR is involved in 
regulation of iron dicitrate transport.
CD-Length = 323 residues,  99.4% aligned
Score =  233 bits (595), Expect = 3e-62
Identities = 144/330 (43%), Positives = 184/330 (55%), Gaps = 13/330 (3%)

COG3712, FecR, Fe2+-dicitrate sensor, membrane component 
[Inorganic ion transport and metabolism / 
Signal transduction mechanisms]
CD-Length = 322 residues,  95.3% aligned
Score =  216 bits (551), Expect = 3e-57
Identities = 141/319 (44%), Positives = 185/319 (57%), Gaps = 12/319 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14543




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21589




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32154




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2220_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2220
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3771
                           PA3409_tr
                           translation of PA3409
                           328
                           99.39
                           99.69
                           0
                           1646.0
     

     
     
115982
                           gb|AAG06797.1|AE004762_3
                           (AE004762) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           328
                           99.08
                           99.69
                           0
                           1643.0
     

     
     
115983
                           emb|CAE46935.1|
                           (X81195) hasS [Serratia marcescens]
                           336
                           43.45
                           55.35
                           27
                           578.0
     

     






      

          
GC ORFID: 45222How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3409Glimmer Score: 

          
Start: 3233191Stop: 3232205

          
Length: 987


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3409 translation of PA3409Homolog Bit Score 638.0

          
Other Homologs:  t_PA3409 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACAGCCCCCAGGAACAACAGCAGATCCGCCAGCAGGCCGCCGAATGGGCGATCCGCCTGGACGGCGGC 
GACCTCGACCGGTCCCGGCGCGAAGCGCTGGACGGCTGGCTGGCGGCCGACCCCCGGCACCCGGCCGCGCTG 
GCGCTGGCGCAACGGACCTGGAAACAGCTGGGATCGCTGGCCGAACCGCGGACGATGGTTCAGACGCCGGTC 
GCCAGCGCGCCGCGCCGCGCCGGGGGGCGGCGCAAGGGCTGGCGCGGCTGGGCCGCGGCGGCGGCGGTGCTG 
CTGGCCCTGGGCAGCGCCTGGAACGAACGCGACGCCGGCGTGAGCTGGCTGGCCGACCACGCCACCGGCAAG 
GGCGAGGTGCGCATCCTGCGGCTGGTGGATGGCAGCGAGGTCGAGCTGGACGCACAGAGCGCCATCGATGTC 
GCCTACGACAGCCGCGAGCGACGGGTGCGCCTGCTCGAAGGCAGCGCGATCTTCCGCGCCGCCCCACGCGCG 
GGCCGGGAGACCCGGCCCTTCGTGGTGGAAAGCGCCGGCGGCAGCACTCGCGCGCTGGGCACTCGGTTCCTG 
GTCAGCCGCAACGACGACGGCAGCGTCCAGGTCGGGGTGCTCGAACACCGCGTCGCGGTGGCCCTGGCGCAT 
CCGCGCACGGGGACCGTCGGGCGCCGCGAGCTGGGCGAGGGCGAGAGCCTGCGCTACAGCGCGGAGGGCGGC 
GTCGAGGCGCCGCTGGGCGGTCGCCTCGACGACCTGACCAGTTGGCGGCGCGGCCTGCTGGTCTTCGACGAG 
CAGCCGCTGGGCGAGGTGGTGGCGCGCCTCAATCGCTACCGGCCGGGGCATTTGCTGGTGGCTCCCGGTGCG 
TTGGCGCAGCGGCGGGTCAGCGGGGTATTCCGGGTCGCCGACCTGGAGGCCTCGTTGCAGTCGATCAGCGAT 
GAGCTGGGCGTGCGCAGCCTGGGCCTGGCGGGAGTGACGCTGCTGTACTGA