ViewGene
Locus Name:
GeneID:
Location:

GeneID:2219
TrivialName: PA14_33240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33240
PAO1 Ortholog Locus:PA2428
Sequence Length:915
Protein Length:304
Start: 2908569
Stop: 2909483
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05816.1|AE004670_4 (AE004670) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 304/304 (100%), Positives = 304/304 (100%)
Sequence:
ATGGACTCCTATGGCGATACCTCGGGCCGCATCGGTCGCGACTGGCTCGATCGACACGACGAAGAGCTGGAG
CAGGAACTGCTCGACGACGAGCTGAACCTGGACGAGCTGTTCGGTCCCGAGCAGGAGGATGCGCCCGGCGAG
TTGAGTCGGCGCCGCTATTTCCGCGAACTGTTCCGCCTGCAACGGGAACTGGTGAAACTGCAGAACTGGGTG
GTGCACACCGGGCACAAGGTGGTGATTCTCTTCGAGGGACGCGACGCGGCGGGCAAGGGCGGCGTGATCAAG
CGCATCACCCAGCGCCTCAACCCGCGGGTCTGCCGGGTCGCCGCGCTGCCCGCGCCGAACGACCGCGAGCAG
ACCCAGTGGTATTTCCAGCGCTACGTCTCGCACCTGCCGGCCGGCGGCGAGATCGTCCTGTTCGACCGCAGC
TGGTACAACCGCGCCGGGGTCGAGCGGGTCATGGGTTTCTGCAACGACGAACAATACGAGGAATTCTTCCGC
AGCGTGCCGGAGTTCGAAAAGATGCTGGCGCGCTCGGGCATCCAGTTGCTCAAGTACTGGTTCTCCATCTCC
GACGCCGAGCAGCACCTGCGCTTCCTCAGCCGTATCCACGATCCGCTCAAGCAGTGGAAGCTCAGTCCGATG
GACCTGGAGTCGCGGCGGCGCTGGGAGGCCTACACCAAGGCCAAGGAAACCATGCTCGAACGCACCCACATC
CCCGAGGCGCCCTGGTGGGTGGTACAGGCCGACGACAAGAAGCGCGCGCGGCTGAATTGCATCCACCACCTG
TTGCAGCAGATGCCCTACCGGGAAGTTCCGCAGCCGCCGGTACACCTGCCGGAGCGCCTGCGCCACGCCGAT
TACGTCAGGCATCCGACGCCCGGTGAGATCATCGTGCCGGAAGTCTATTGA
Translation:
MDSYGDTSGRIGRDWLDRHDEELEQELLDDELNLDELFGPEQEDAPGELSRRRYFRELFRLQRELVKLQNWV
VHTGHKVVILFEGRDAAGKGGVIKRITQRLNPRVCRVAALPAPNDREQTQWYFQRYVSHLPAGGEIVLFDRS
WYNRAGVERVMGFCNDEQYEEFFRSVPEFEKMLARSGIQLLKYWFSISDAEQHLRFLSRIHDPLKQWKLSPM
DLESRRRWEAYTKAKETMLERTHIPEAPWWVVQADDKKRARLNCIHHLLQQMPYREVPQPPVHLPERLRHAD
YVRHPTPGEIIVPEVY*
AnnotationID:2227GeneID:2219
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:45
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2428
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4441




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21587




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2219
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3769
                           PA2428_tr
                           translation of PA2428
                           304
                           99.99
                           99.99
                           0
                           1645.0
     

     
     
115935
                           gb|AAG05816.1|AE004670_4
                           (AE004670) hypothetical protein PA2428 [Pseudomonas aeruginosa PAO1]
                           304
                           99.99
                           99.99
                           0
                           1645.0
     

     
     
115936
                           gb|AAB09718.1|
                           (U12891) ORF1 [Pseudomonas aeruginosa]
                           304
                           77.96
                           77.96
                           67
                           1292.0
     

     
     
115940
                           gb|AAK64750.1|
                           (AE007203) conserved hypothetical protein [Sinorhizobium meliloti]
                           311
                           63.02
                           75.56
                           12
                           1008.0
     

     
     
115938
                           dbj|BAC48078.1|
                           (AP005945) bll2813 [Bradyrhizobium japonicum USDA 110]
                           336
                           62.50
                           72.32
                           39
                           1077.0
     

     






      

          
GC ORFID: 45221How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2428Glimmer Score: 

          
Start: 2045347Stop: 2044433

          
Length: 915


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2428 translation of PA2428Homolog Bit Score 638.0

          
Other Homologs:  t_PA0141 (ORF: BLASTX 287.0), t_PA2428 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACTCCTATGGCGATACCTCGGGCCGCATCGGTCGCGACTGGCTCGATCGACACGACGAAGAGCTGGAG 
CAGGAACTGCTCGACGACGAGCTGAACCTGGACGAGCTGTTCGGTCCCGAGCAGGAGGATGCGCCCGGCGAG 
TTGAGTCGGCGCCGCTATTTCCGCGAACTGTTCCGCCTGCAACGGGAACTGGTGAAACTGCAGAACTGGGTG 
GTGCACACCGGGCACAAGGTGGTGATTCTCTTCGAGGGACGCGACGCGGCGGGCAAGGGCGGCGTGATCAAG 
CGCATCACCCAGCGCCTCAACCCGCGGGTCTGCCGGGTCGCCGCGCTGCCCGCGCCGAACGACCGCGAGCAG 
ACCCAGTGGTATTTCCAGCGCTACGTCTCGCACCTGCCGGCCGGCGGCGAGATCGTCCTGTTCGACCGCAGC 
TGGTACAACCGCGCCGGGGTCGAGCGGGTCATGGGTTTCTGCAACGACGAACAATACGAGGAATTCTTCCGC 
AGCGTGCCGGAGTTCGAAAAGATGCTGGCGCGCTCGGGCATCCAGTTGCTCAAGTACTGGTTCTCCATCTCC 
GACGCCGAGCAGCACCTGCGCTTCCTCAGCCGTATCCACGATCCGCTCAAGCAGTGGAAGCTCAGTCCGATG 
GACCTGGAGTCGCGGCGGCGCTGGGAGGCCTACACCAAGGCCAAGGAAACCATGCTCGAACGCACCCACATC 
CCCGAGGCGCCCTGGTGGGTGGTACAGGCCGACGACAAGAAGCGCGCGCGGCTGAATTGCATCCACCACCTG 
TTGCAGCAGATGCCCTACCGGGAAGTTCCGCAGCCGCCGGTACACCTGCCGGAGCGCCTGCGCCACGCCGAT 
TACGTCAGGCATCCGACGCCCGGTGAGATCATCGTGCCGGAAGTCTATTGA