ViewGene
Locus Name:
GeneID:
Location:

GeneID:2217
TrivialName: PA14_69110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69110
PAO1 Ortholog Locus:PA5234
Sequence Length:978
Protein Length:325
Start: 6163896
Stop: 6164873
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08619.1|AE004936_2 (AE004936) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 324/325 (99%), Positives = 325/325 (100%)
Sequence:
ATGAAAGCCGTCCTCTGCAAAGCCTTCGGCCCGGCCAGCAGCCTGGTGCTGGAAGAAATCGCCAGCCCGAGC
CCGGCGAAGAACGAAATCCTCCTCGATGTGCACGCCGCCGGGGTCAACTTCCCAGACACCCTGATCATCGAG
GGCAAGTACCAGTTCAAACCGCCCTTCCCCTTCTCCCCGGGCGGCGAGGCGGCCGGAGTGGTCGCCGCGGTC
GGCGAAAAGGTCGCCCACGTCAGGCCCGGCGACCGGGTCATGGCCCTGACCGGCTGGGGCAGCTTCGCCGAG
CAGGTCAAGGTGCCCGGCTATAACGTGATGCCGATACCCGAAGGCATGGACTTCGCCAGCGCCGCCGCCTTC
GGCATGACCTACGGCACCTCGATGCACGCCCTGAAACAGCGCGCCAACCTGCAACCCGGCGAGACCCTGCTG
GTGCTCGGCGCTTCCGGCGGGGTCGGGCTGGCTGCCGTGGAGATCGGCAAGGCCATGGGCGCCCGGGTGATC
GCTGCCGCCAGTACCCCCGACAAGCTCGCCGTGGCCAAGGCCGCCGGCGCCGACGAACTGATCAACTACAGC
GAAGGTAGCCTGCGCGAGCAGCTCAAGGCCTTGACCGGCGGCCAGGGCGTCGATGTGATCTACGATCCGGTG
GGCGGCGAACTGTTCGAGGAGGCCTTCCGCAGCATCGCCTGGAACGGACGGATGCTGGTGGTCGGCTTCGCC
AGCGGCAGCATCCCTTCGCTGCCGGCCAACCTGACCCTGCTCAAGGGCGCCTCGCTGGTCGGCGTGTTCTGG
GGATCGTTCGCCCAACGCCAGCCGCAGGACAACGCTGACAACTTCCGCCAGCTGTTCGCCTGGCACGCCGAA
GGCAAGCTGAAACCGCTGGTGTCGCAGCGCTTCCCGCTGGAACGGGCCGGTGACGCCATCGACGCCCTCGGC
CAGCGCAAGGCTGTCGGCAAGGTGGTGGTGGAGGTTCGCTGA
Translation:
MKAVLCKAFGPASSLVLEEIASPSPAKNEILLDVHAAGVNFPDTLIIEGKYQFKPPFPFSPGGEAAGVVAAV
GEKVAHVRPGDRVMALTGWGSFAEQVKVPGYNVMPIPEGMDFASAAAFGMTYGTSMHALKQRANLQPGETLL
VLGASGGVGLAAVEIGKAMGARVIAAASTPDKLAVAKAAGADELINYSEGSLREQLKALTGGQGVDVIYDPV
GGELFEEAFRSIAWNGRMLVVGFASGSIPSLPANLTLLKGASLVGVFWGSFAQRQPQDNADNFRQLFAWHAE
GKLKPLVSQRFPLERAGDAIDALGQRKAVGKVVVEVR*
AnnotationID:2225GeneID:2217
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:13
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase, zinc-binding
Cell Localization:()
Synonyms:PA5234
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0604,pfam00107,COG1064,COG1063
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58657.1| (AE016875) oxidoreductase, zinc-binding [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 325

 Score =  529 bits (1363), Expect = e-150
 Identities = 264/324 (81%), Positives = 291/324 (89%)

>gb|AAN70775.1|AE016721_8 (AE016793) alcohol dehydrogenase, zinc-containing [Pseudomonas
           putida KT2440]
          Length = 325

 Score =  521 bits (1343), Expect = e-147
 Identities = 261/325 (80%), Positives = 288/325 (88%)

>emb|CAD14905.1| (AL646063) PROBABLE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
          Length = 324

 Score =  402 bits (1034), Expect = e-111
 Identities = 199/323 (61%), Positives = 244/323 (75%)








 
Structural Features:
COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 326 residues, 100.0% aligned
Score =  284 bits (727), Expect = 1e-77
Identities = 143/328 (43%), Positives = 196/328 (59%), Gaps = 6/328 (1%)

pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.
CD-Length = 341 residues, 100.0% aligned
Score =  210 bits (535), Expect = 2e-55
Identities = 129/348 (37%), Positives = 169/348 (48%), Gaps = 38/348 (10%)

COG1064, AdhP, Zn-dependent alcohol dehydrogenases 
CD-Length = 339 residues,  97.9% aligned
Score =  209 bits (534), Expect = 3e-55
Identities = 121/351 (34%), Positives = 172/351 (49%), Gaps = 48/351 (13%)

COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases 
[Amino acid transport and metabolism]
CD-Length = 350 residues,  99.7% aligned
Score =  147 bits (371), Expect = 2e-36
Identities = 109/362 (30%), Positives = 166/362 (45%), Gaps = 52/362 (14%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4437




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21583




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34859




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2217_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2217
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3767
                           PA5234_tr
                           translation of PA5234
                           325
                           99.69
                           99.99
                           0
                           1648.0
     

     
     
115903
                           gb|AAG08619.1|AE004936_2
                           (AE004936) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           325
                           99.69
                           99.99
                           0
                           1648.0
     

     
     
115904
                           gb|AAO58657.1|
                           (AE016875) oxidoreductase, zinc-binding [Pseudomonas syringae pv. tomato str. DC3000]
                           325
                           81.23
                           89.53
                           0
                           1363.0
     

     
     
115905
                           gb|AAN70775.1|AE016721_8
                           (AE016793) alcohol dehydrogenase, zinc-containing [Pseudomonas putida KT2440]
                           325
                           80.30
                           88.61
                           0
                           1343.0
     

     
     
115906
                           emb|CAD14905.1|
                           (AL646063) PROBABLE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           325
                           61.23
                           75.07
                           1
                           1032.0
     

     






      

          
GC ORFID: 45219How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5234Glimmer Score: 

          
Start: 5427583Stop: 5428560

          
Length: 978


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5234 translation of PA5234Homolog Bit Score 639.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1054 (ORF: BLASTX 530.0), psyr_15may02_Scaffold2_revised_gene3860 (ORF: BLASTX 188.0), t_PA5234 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCCGTCCTCTGCAAAGCCTTCGGCCCGGCCAGCAGCCTGGTGCTGGAAGAAATCGCCAGCCCGAGC 
CCGGCGAAGAACGAAATCCTCCTCGATGTGCACGCCGCCGGGGTCAACTTCCCAGACACCCTGATCATCGAG 
GGCAAGTACCAGTTCAAACCGCCCTTCCCCTTCTCCCCGGGCGGCGAGGCGGCCGGAGTGGTCGCCGCGGTC 
GGCGAAAAGGTCGCCCACGTCAGGCCCGGCGACCGGGTCATGGCCCTGACCGGCTGGGGCAGCTTCGCCGAG 
CAGGTCAAGGTGCCCGGCTATAACGTGATGCCGATACCCGAAGGCATGGACTTCGCCAGCGCCGCCGCCTTC 
GGCATGACCTACGGCACCTCGATGCACGCCCTGAAACAGCGCGCCAACCTGCAACCCGGCGAGACCCTGCTG 
GTGCTCGGCGCTTCCGGCGGGGTCGGGCTGGCTGCCGTGGAGATCGGCAAGGCCATGGGCGCCCGGGTGATC 
GCTGCCGCCAGTACCCCCGACAAGCTCGCCGTGGCCAAGGCCGCCGGCGCCGACGAACTGATCAACTACAGC 
GAAGGTAGCCTGCGCGAGCAGCTCAAGGCCTTGACCGGCGGCCAGGGCGTCGATGTGATCTACGATCCGGTG 
GGCGGCGAACTGTTCGAGGAGGCCTTCCGCAGCATCGCCTGGAACGGACGGATGCTGGTGGTCGGCTTCGCC 
AGCGGCAGCATCCCTTCGCTGCCGGCCAACCTGACCCTGCTCAAGGGCGCCTCGCTGGTCGGCGTGTTCTGG 
GGATCGTTCGCCCAACGCCAGCCGCAGGACAACGCTGACAACTTCCGCCAGCTGTTCGCCTGGCACGCCGAA 
GGCAAGCTGAAACCGCTGGTGTCGCAGCGCTTCCCGCTGGAACGGGCCGGTGACGCCATCGACGCCCTCGGC 
CAGCGCAAGGCTGTCGGCAAGGTGGTGGTGGAGGTTCGCTGA