ViewGene
Locus Name:
GeneID:
Location:

GeneID:2216
TrivialName: PA14_37200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37200
PAO1 Ortholog Locus:PA2117
Sequence Length:984
Protein Length:327
Start: 3313936
Stop: 3314919
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05505.1|AE004639_3 (AE004639) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 316/327 (96%), Positives = 323/327 (98%), Gaps = 1/327 (0%)
Sequence:
ATGGCGTTCAAACGGATAGCACTGGCCTACTGCGTGCAACTGGAGCGAGTGATCTCCATCGCCAGTGCCCGC
CGCGAATACTTCTCCCAGGCCGAGCCGCGCAAACGCTTCGACTTCCTCTGCTCCAGCGAAGGGTGCCGGGCA
CAGGGGATCAAGGTATCGGCGAGCAACTACGACAAGCTGCCGCAGGACACCCGCAAGGCCGCGCACTTCAGC
AAGTTCCCGCATTCCACCCACCTGCCGGACTGCGAGTGGTTCGTCGAGGACGACGAGGACGCTCTGCGCCCG
GGCGAATCCGCCGAGGAGGCCGGCCAGCGGCGCATCCGCGACAAGCTGGACGCCTACGTCGAGGAATTCGAT
CCGGCCATCGCCGAGGAAGCCGCGCCGCCACCAGCGGACCCGGACGCCGAGGAACAGCCGCCGGCCTCCGCC
GCAGTGCGCGCCGACGCTCCCGCCGCGCCTCGGCAGAGAACGCAACGGCGGCGGCGCACCCGCGATTTCGAA
CAGCTCGTCGACACCTTCCGCCAGGCCCGCGCCGAACTGCCGGCGGAAGAATTCAAGCAGTTGGACATCCAC
ATCAGCGGCCTCGGCCGGATAGCGCTGCGCGCCTATTTCCAGCACATCGGCTATGCCACCCCGGGCAGCGCC
GGCAAGGTGTTCTACGGCGGCGCCGACCTGCTGCCCAAGCGCTACGGCTCGCCGAACCGGCCGCAAGGCTTC
CGCTTCAAGTTCCGCGACCGCATCGACGGCAAGCCGGTATTCCTCTACGTCGCCCCGGAAACCTTGCAGGCC
TATCCGCATCGGCGCTACCTCGAAGACATCCTCGGCTGCGCCGAAACGGTGCGCTACTTCACCCTCTACGCC
CTCGGCCGGCTCGTCGAGGCGCCGAGCGGCAAGAGCTACAGCCTGGAGCCGGACGCCCTGCGCCACCTGGCG
ATCATCCCCGGTCCGGCGAAGGACGACGCCTCTCAGAGTTCGTCGTAG
Translation:
MAFKRIALAYCVQLERVISIASARREYFSQAEPRKRFDFLCSSEGCRAQGIKVSASNYDKLPQDTRKAAHFS
KFPHSTHLPDCEWFVEDDEDALRPGESAEEAGQRRIRDKLDAYVEEFDPAIAEEAAPPPADPDAEEQPPASA
AVRADAPAAPRQRTQRRRRTRDFEQLVDTFRQARAELPAEEFKQLDIHISGLGRIALRAYFQHIGYATPGSA
GKVFYGGADLLPKRYGSPNRPQGFRFKFRDRIDGKPVFLYVAPETLQAYPHRRYLEDILGCAETVRYFTLYA
LGRLVEAPSGKSYSLEPDALRHLAIIPGPAKDDASQSSS*
AnnotationID:2224GeneID:2216
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 09:09:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2117
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.







   
Genomic Context:






   
Comment:


















    ReferenceID:4435




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21581




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2216
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3766
                           PA2117_tr
                           translation of PA2117
                           327
                           96.63
                           98.77
                           1
                           1651.0
     

     
     
115901
                           gb|AAG05505.1|AE004639_3
                           (AE004639) hypothetical protein PA2117 [Pseudomonas aeruginosa PAO1]
                           327
                           96.63
                           98.77
                           1
                           1651.0
     

     
     
115902
                           gb|AAO54855.1|
                           (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           345
                           46.37
                           61.73
                           32
                           754.0
     

     






      

          
GC ORFID: 45218How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2117Glimmer Score: 

          
Start: 1639978Stop: 1638995

          
Length: 984


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2117 translation of PA2117Homolog Bit Score 639.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4927 (ORF: BLASTX 284.0), t_PA2117 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGTTCAAACGGATAGCACTGGCCTACTGCGTGCAACTGGAGCGAGTGATCTCCATCGCCAGTGCCCGC 
CGCGAATACTTCTCCCAGGCCGAGCCGCGCAAACGCTTCGACTTCCTCTGCTCCAGCGAAGGGTGCCGGGCA 
CAGGGGATCAAGGTATCGGCGAGCAACTACGACAAGCTGCCGCAGGACACCCGCAAGGCCGCGCACTTCAGC 
AAGTTCCCGCATTCCACCCACCTGCCGGACTGCGAGTGGTTCGTCGAGGACGACGAGGACGCTCTGCGCCCG 
GGCGAATCCGCCGAGGAGGCCGGCCAGCGGCGCATCCGCGACAAGCTGGACGCCTACGTCGAGGAATTCGAT 
CCGGCCATCGCCGAGGAAGCCGCGCCGCCACCAGCGGACCCGGACGCCGAGGAACAGCCGCCGGCCTCCGCC 
GCAGTGCGCGCCGACGCTCCCGCCGCGCCTCGGCAGAGAACGCAACGGCGGCGGCGCACCCGCGATTTCGAA 
CAGCTCGTCGACACCTTCCGCCAGGCCCGCGCCGAACTGCCGGCGGAAGAATTCAAGCAGTTGGACATCCAC 
ATCAGCGGCCTCGGCCGGATAGCGCTGCGCGCCTATTTCCAGCACATCGGCTATGCCACCCCGGGCAGCGCC 
GGCAAGGTGTTCTACGGCGGCGCCGACCTGCTGCCCAAGCGCTACGGCTCGCCGAACCGGCCGCAAGGCTTC 
CGCTTCAAGTTCCGCGACCGCATCGACGGCAAGCCGGTATTCCTCTACGTCGCCCCGGAAACCTTGCAGGCC 
TATCCGCATCGGCGCTACCTCGAAGACATCCTCGGCTGCGCCGAAACGGTGCGCTACTTCACCCTCTACGCC 
CTCGGCCGGCTCGTCGAGGCGCCGAGCGGCAAGAGCTACAGCCTGGAGCCGGACGCCCTGCGCCACCTGGCG 
ATCATCCCCGGTCCGGCGAAGGACGACGCCTCTCAGAGTTCGTCGTAG