ViewGene
Locus Name:
GeneID:
Location:

GeneID:2215
TrivialName: PA14_49690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49690
PAO1 Ortholog Locus:PA1137
Sequence Length:987
Protein Length:328
Start: 4420734
Stop: 4421720
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04526.1|AE004543_10 (AE004543) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 326/328 (99%), Positives = 328/328 (100%)
Sequence:
ATGACCGCCATCGAGATCGCCCGGCCCGGCGGCCCCGAGGTACTGGTGGCGACCAGCCGGCCGCTGCCGACG
CCCGGCCCGCGCGAGGTCCTGGTCGAAGTCCGCGCCGCCGGCGTCAATGGCCCCGACGTGCTTCAGCGCAAG
GGCGTGTACGACCCGCCGCCCGGCGCCTCGGACATTCCCGGCCTGGAAATCGCCGGCACGGTGCGGGCGGTC
GGCAGCGAGGTCAGCCGCTTCGCCGTCGGCGAGGCGGTGATGGCGTTGATTCCCGGCGGCGGCTACGCGCAG
TTCGCGGTGGCCGACGAGCGCACCACCCTGCACCTGCCCGACGGCCTGGGCATGGAGGAAGCGGCGGCGCTG
CCGGAAACCTTCATGACCGTCTGGGTCAACCTGTTCCAGCGCGGTGGCTTCAAGGCCGGCGAGACGCTGCTG
GTCCACGGTGGCGCCTCCGGCATCGGCACCGCCGCGACCATGCTGGGCAAGGCCTTCGGCGCGGCGAAAATC
TTTACCACGATCTCCAGCGAGGCCCAGCGCGAGGCCAGCCTGCGCCTCGGCGCTGACCTGGCGATCAACTAC
ACCGAGCAGGATTTCGTCGAGGAAGTGCTGCGCGGCACCGAAGGTCGCGGGGTCGATGTGATCGTCGATATC
GTTGCCGGCGACTATGTGACGCGGAACTACCAGGCGGCGGCGATGAACGGACGGATCGTGCAGATCGGCGTG
ATCAAGGGCAAGGCCGCCGAAGTCGACCTGTTCCCGATGCTGAGCAAGCGCCTGGTCCATCTTGGCTCGACC
CTGCGCTCGCGGAGCCACGACGAGAAAGGCGCGATCATCGCCGAACTGGAGCGCCAGGTCTGGCCGCACGTG
CGCGCCGGCACTGTCCGGCCGCAGGTGTTCCGCACCTTCCCCCTGGAACAGGCGCGCCAGGCCCACGAACTG
ATGGACTCCGGCCAGCACATCGGCAAGATCGTCCTCACGTCCGCTCCCTGA
Translation:
MTAIEIARPGGPEVLVATSRPLPTPGPREVLVEVRAAGVNGPDVLQRKGVYDPPPGASDIPGLEIAGTVRAV
GSEVSRFAVGEAVMALIPGGGYAQFAVADERTTLHLPDGLGMEEAAALPETFMTVWVNLFQRGGFKAGETLL
VHGGASGIGTAATMLGKAFGAAKIFTTISSEAQREASLRLGADLAINYTEQDFVEEVLRGTEGRGVDVIVDI
VAGDYVTRNYQAAAMNGRIVQIGVIKGKAAEVDLFPMLSKRLVHLGSTLRSRSHDEKGAIIAELERQVWPHV
RAGTVRPQVFRTFPLEQARQAHELMDSGQHIGKIVLTSAP*
AnnotationID:2223GeneID:2215
AnnotatorUID: danlee
Modification Date/Time: 2004-09-10 13:01:03
Gene Name:
Confidence Code:3
GeneProduct:probable oxidoreductase
Cell Localization:()
Synonyms:PA1137
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0604, pfam00107, COG1064
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases. Score: 274, 8e-75
pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase. Score: 200, 2e-52
COG1064, AdhP, Zn-dependent alcohol dehydrogenases. Score: 163, 2e-41






   
Genomic Context:






   
Comment:


















    ReferenceID:4433




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21579




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2215
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3764
                           PA1137_tr
                           translation of PA1137
                           328
                           99.39
                           99.99
                           0
                           1648.0
     

     
     
115864
                           gb|AAG04526.1|AE004543_10
                           (AE004543) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           328
                           99.39
                           99.99
                           0
                           1648.0
     

     
     
115866
                           emb|CAC90475.1|
                           (AJ414149) probable Zinc-binding dehydrogenase [Yersinia pestis CO92]
                           338
                           60.35
                           71.30
                           12
                           1039.0
     

     
     
115865
                           gb|AAM85384.1|AE013784_3
                           (AE013784) putative oxidoreductase [Yersinia pestis KIM]
                           350
                           58.28
                           68.85
                           24
                           1039.0
     

     
     
115870
                           gb|AAN30637.1|AE014465_10
                           (AE014465) alcohol dehydrogenase, zinc-containing [Brucella suis 1330]
                           328
                           56.09
                           67.98
                           2
                           885.0
     

     






      

          
GC ORFID: 45217How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1137Glimmer Score: 

          
Start: 533174Stop: 532188

          
Length: 987


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1137 translation of PA1137Homolog Bit Score 639.0

          
Other Homologs:  t_PA3256 (ORF: BLASTX 207.0), t_PA1137 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCCATCGAGATCGCCCGGCCCGGCGGCCCCGAGGTACTGGTGGCGACCAGCCGGCCGCTGCCGACG 
CCCGGCCCGCGCGAGGTCCTGGTCGAAGTCCGCGCCGCCGGCGTCAATGGCCCCGACGTGCTTCAGCGCAAG 
GGCGTGTACGACCCGCCGCCCGGCGCCTCGGACATTCCCGGCCTGGAAATCGCCGGCACGGTGCGGGCGGTC 
GGCAGCGAGGTCAGCCGCTTCGCCGTCGGCGAGGCGGTGATGGCGTTGATTCCCGGCGGCGGCTACGCGCAG 
TTCGCGGTGGCCGACGAGCGCACCACCCTGCACCTGCCCGACGGCCTGGGCATGGAGGAAGCGGCGGCGCTG 
CCGGAAACCTTCATGACCGTCTGGGTCAACCTGTTCCAGCGCGGTGGCTTCAAGGCCGGCGAGACGCTGCTG 
GTCCACGGTGGCGCCTCCGGCATCGGCACCGCCGCGACCATGCTGGGCAAGGCCTTCGGCGCGGCGAAAATC 
TTTACCACGATCTCCAGCGAGGCCCAGCGCGAGGCCAGCCTGCGCCTCGGCGCTGACCTGGCGATCAACTAC 
ACCGAGCAGGATTTCGTCGAGGAAGTGCTGCGCGGCACCGAAGGTCGCGGGGTCGATGTGATCGTCGATATC 
GTTGCCGGCGACTATGTGACGCGGAACTACCAGGCGGCGGCGATGAACGGACGGATCGTGCAGATCGGCGTG 
ATCAAGGGCAAGGCCGCCGAAGTCGACCTGTTCCCGATGCTGAGCAAGCGCCTGGTCCATCTTGGCTCGACC 
CTGCGCTCGCGGAGCCACGACGAGAAAGGCGCGATCATCGCCGAACTGGAGCGCCAGGTCTGGCCGCACGTG 
CGCGCCGGCACTGTCCGGCCGCAGGTGTTCCGCACCTTCCCCCTGGAACAGGCGCGCCAGGCCCACGAACTG 
ATGGACTCCGGCCAGCACATCGGCAAGATCGTCCTCACGTCCGCTCCCTGA