ViewGene
Locus Name:
GeneID:
Location:

GeneID:2214
TrivialName: PA14_53180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53180
PAO1 Ortholog Locus:PA0858
Sequence Length:939
Protein Length:312
Start: 4715144
Stop: 4714206
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04247.1|AE004520_10 (AE004520) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 310/312 (99%), Positives = 311/312 (99%)
Sequence:
ATGACATCCATCGTCGTGGCGGCGCTGTACAAGTTCGTGACTCTCGACGATTACGTGGCGCTGCGTGAACCC
CTGCTGCAAACCCTGCTCGACAACGGTGTGAAAGGCACCTTGCTGCTGGCCGAGGAAGGCATCAACGGCACC
GTCTCCGGTAGCCGCGAAGGCATCGATGCGCTGTTCGCCTGGCTGCGCAGCGATCCCCGGCTGGCCGATATC
GAGCACAAGGAATCCTACTGCGACGAACAGCCGTTCTACCGCACCAAGGTCAAGCTGAAGAAGGAAATCGTC
ACCCTCGGCGTGCTTGGCGTCGATCCGAACAAGCAGGTCGGCCAGTATGTCGAGGCGAAGGACTGGAATGCC
CTGATCAGCGATCCGGAAGTCCTGCTGATCGATACCCGCAACGACTACGAGGTGGCGATCGGCACCTTCGAG
GGCGCGGTCGATCCGAAGACCAGGTCGTTCCGCGAGTTCCCCGAGTACATCAAGGCCCACTACGACCCGGCG
CGGCACAAGAAGGTGGCGATGTTCTGCACCGGCGGCATCCGCTGCGAGAAGGCTTCCAGCTACATGCTCGGC
GCCGGTTTCGAGGAGGTCTTCCACCTCAGGGGCGGCATCCTCAAGTACCTCGAAGAGGTGCCGCAGGAACAG
AGCCTGTGGCGCGGCGACTGCTTCGTATTCGACAACCGCGTGACCGTGCGCCACGATCTTAGCGAGGGCGAG
TACGATCAGTGCCACGCCTGCCGCAACCCGGTTTCGCTGGAAGACCGCCAGTCCGAGCACTACGTGCCCGGC
ATCAGCTGTCCGCACTGCTGGGACTCGCTGAGCGAGAAGACCCGCGCCGGCGCCCGCGAGCGGCAGAAACAG
ATCGAACTGGCGCGGCAGCGCAACCAGCCGCACCCGCTCGGTCGCGATCCGCGCCAGTCCACGCTGGAGAAC
TGA
Translation:
MTSIVVAALYKFVTLDDYVALREPLLQTLLDNGVKGTLLLAEEGINGTVSGSREGIDALFAWLRSDPRLADI
EHKESYCDEQPFYRTKVKLKKEIVTLGVLGVDPNKQVGQYVEAKDWNALISDPEVLLIDTRNDYEVAIGTFE
GAVDPKTRSFREFPEYIKAHYDPARHKKVAMFCTGGIRCEKASSYMLGAGFEEVFHLRGGILKYLEEVPQEQ
SLWRGDCFVFDNRVTVRHDLSEGEYDQCHACRNPVSLEDRQSEHYVPGISCPHCWDSLSEKTRAGARERQKQ
IELARQRNQPHPLGRDPRQSTLEN*
AnnotationID:2222GeneID:2214
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 17:05:01
Gene Name:
Confidence Code:3
GeneProduct:possiblel sulfurtransferase
Cell Localization:()
Synonyms:PA0858
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1054
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1054, Predicted sulfurtransferase [General function prediction only]
       CD-Length = 308 residues,  99.7% aligned
       Score =  443 bits (1142), Expect = 2e-125






   
Genomic Context:






   
Comment:


















    ReferenceID:4431




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21577




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2214
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3763
                           PA0858_tr
                           translation of PA0858
                           312
                           99.35
                           99.67
                           0
                           1647.0
     

     
     
115831
                           gb|AAG04247.1|AE004520_10
                           (AE004520) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           312
                           99.35
                           99.67
                           0
                           1647.0
     

     
     
115832
                           emb|CAD42121.1|
                           (AJ243174) hypothetical protein [Pseudomonas fluorescens]
                           313
                           82.10
                           91.69
                           1
                           1411.0
     

     
     
115834
                           gb|AAN67378.1|AE016364_3
                           (AE016780) rhodanese domain protein [Pseudomonas putida KT2440]
                           313
                           80.51
                           89.13
                           4
                           1381.0
     

     
     
115833
                           gb|AAO55254.1|
                           (AE016862) rhodanese-like domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           321
                           79.75
                           88.16
                           13
                           1399.0
     

     






      

          
GC ORFID: 45216How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0858Glimmer Score: 

          
Start: 238763Stop: 239701

          
Length: 939


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0858 translation of PA0858Homolog Bit Score 639.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7720 (ORF: BLASTX 547.0), t_PA0858 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACATCCATCGTCGTGGCGGCGCTGTACAAGTTCGTGACTCTCGACGATTACGTGGCGCTGCGTGAACCC 
CTGCTGCAAACCCTGCTCGACAACGGTGTGAAAGGCACCTTGCTGCTGGCCGAGGAAGGCATCAACGGCACC 
GTCTCCGGTAGCCGCGAAGGCATCGATGCGCTGTTCGCCTGGCTGCGCAGCGATCCCCGGCTGGCCGATATC 
GAGCACAAGGAATCCTACTGCGACGAACAGCCGTTCTACCGCACCAAGGTCAAGCTGAAGAAGGAAATCGTC 
ACCCTCGGCGTGCTTGGCGTCGATCCGAACAAGCAGGTCGGCCAGTATGTCGAGGCGAAGGACTGGAATGCC 
CTGATCAGCGATCCGGAAGTCCTGCTGATCGATACCCGCAACGACTACGAGGTGGCGATCGGCACCTTCGAG 
GGCGCGGTCGATCCGAAGACCAGGTCGTTCCGCGAGTTCCCCGAGTACATCAAGGCCCACTACGACCCGGCG 
CGGCACAAGAAGGTGGCGATGTTCTGCACCGGCGGCATCCGCTGCGAGAAGGCTTCCAGCTACATGCTCGGC 
GCCGGTTTCGAGGAGGTCTTCCACCTCAGGGGCGGCATCCTCAAGTACCTCGAAGAGGTGCCGCAGGAACAG 
AGCCTGTGGCGCGGCGACTGCTTCGTATTCGACAACCGCGTGACCGTGCGCCACGATCTTAGCGAGGGCGAG 
TACGATCAGTGCCACGCCTGCCGCAACCCGGTTTCGCTGGAAGACCGCCAGTCCGAGCACTACGTGCCCGGC 
ATCAGCTGTCCGCACTGCTGGGACTCGCTGAGCGAGAAGACCCGCGCCGGCGCCCGCGAGCGGCAGAAACAG 
ATCGAACTGGCGCGGCAGCGCAACCAGCCGCACCCGCTCGGTCGCGATCCGCGCCAGTCCACGCTGGAGAAC 
TGA