ViewGene
Locus Name:
GeneID:
Location:

GeneID:2212
TrivialName: PA14_70300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70300
PAO1 Ortholog Locus:PA5325
Sequence Length:951
Protein Length:316
Start: 6268955
Stop: 6269905
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08710.1|AE004945_4 (AE004945) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 310/316 (98%), Positives = 312/316 (98%)
Sequence:
ATGAATCCGACCCACCCCCGCAGGCCCCTGCGCCTGGCCGCCTGCGTCACCCTCGCCTTCAGCTGCTGCACC
CATGCCAGCGAAGGCGGCGTGGACAACATAGGTCCAGGAACCGACGGTTTCTTCACCCTGCCACTGGACGTC
GACAACCTCCCGGACCACATGTTCGCCTTCAACGTCTACTACAACCACTACGAAGCCAGGAAGCTGAACATC
AGCTCCTTCGGCGGCAAGGTGTCCGACGTGAAGATCAGCTCGGATGCGATCATCCCTCGCCTGGACTACCTG
AGCCCGCTGCGGATCTTCGGCGGGCGCCTGGGCGGCTACATCGCCCAGCCCTATATCCGCCAACGGGTGGCC
GCGTTCGGCCTGAGCGACGAACGGGAAAGCATGGGTGACACCACCTTCGCGCCGATCATCCTCTGGGACATG
GGCAAGGACCTGACCCTGGCCGCCGCCATGGAGGTCACCGTGCCCACCGGCAAGTACGATGCCGAGCGGCTG
GCCAACACCAGCAACAACTTCTACACCTACAAGCCGCTGTTCTCCTTCACCTGGCTGCCCACCGAACGCACC
GAGCTGTCGCTGAAGGCCACCTACAGCTTCAACATGGAAAACCACGACACCGACTATCGCTCGGGGCAGATC
TTCCATTTCGACTATTCCGCCAGCTACCGGGTGACCGACAACCTGCGCCTCGGCCTGAACGGCTACTACCTC
AAGCAGACCACCGACGACAAACAGAACGGCGAGACCGTACGGGTGTTCGGTTTCGGCGAGGAAGTCGACGAT
GGCGTACGCGGCCAGGTCTTCGCCATCGGCCCGGCCGTGCACCTGACCTTCCTCAAGTACGCCAGCGCGGAG
ATCCGCTGGGCCAAGGAATTCGACGTGGAGAACCGCCCCGAGGGCGACATGCTCTGGGCCAAGCTGACCATT
CCGTTCGAACTCTGA
Translation:
MNPTHPRRPLRLAACVTLAFSCCTHASEGGVDNIGPGTDGFFTLPLDVDNLPDHMFAFNVYYNHYEARKLNI
SSFGGKVSDVKISSDAIIPRLDYLSPLRIFGGRLGGYIAQPYIRQRVAAFGLSDERESMGDTTFAPIILWDM
GKDLTLAAAMEVTVPTGKYDAERLANTSNNFYTYKPLFSFTWLPTERTELSLKATYSFNMENHDTDYRSGQI
FHFDYSASYRVTDNLRLGLNGYYLKQTTDDKQNGETVRVFGFGEEVDDGVRGQVFAIGPAVHLTFLKYASAE
IRWAKEFDVENRPEGDMLWAKLTIPFEL*
AnnotationID:2220GeneID:2212
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 14:02:25
Gene Name:
Confidence Code:3
GeneProduct:putative enzyme
Cell Localization:()
Synonyms:PA5325
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4313
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4313, Protein involved in meta-pathway of phenol degradation 
[Energy production and conversion]
CD-Length = 304 residues,  99.3% aligned
Score =  369 bits (948), Expect = 3e-103
Identities = 142/312 (45%), Positives = 171/312 (54%), Gaps = 13/312 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4427




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21573




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34717




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2212_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2212
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3759
                           PA5325_tr
                           translation of PA5325
                           316
                           98.10
                           98.73
                           0
                           1651.0
     

     
     
115826
                           gb|AAG08710.1|AE004945_4
                           (AE004945) hypothetical protein PA5325 [Pseudomonas aeruginosa PAO1]
                           316
                           98.10
                           98.73
                           0
                           1651.0
     

     






      

          
GC ORFID: 45214How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5325Glimmer Score: 

          
Start: 5532644Stop: 5533594

          
Length: 951


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5325 translation of PA5325Homolog Bit Score 640.0

          
Other Homologs:  t_PA5325 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCCGACCCACCCCCGCAGGCCCCTGCGCCTGGCCGCCTGCGTCACCCTCGCCTTCAGCTGCTGCACC 
CATGCCAGCGAAGGCGGCGTGGACAACATAGGTCCAGGAACCGACGGTTTCTTCACCCTGCCACTGGACGTC 
GACAACCTCCCGGACCACATGTTCGCCTTCAACGTCTACTACAACCACTACGAAGCCAGGAAGCTGAACATC 
AGCTCCTTCGGCGGCAAGGTGTCCGACGTGAAGATCAGCTCGGATGCGATCATCCCTCGCCTGGACTACCTG 
AGCCCGCTGCGGATCTTCGGCGGGCGCCTGGGCGGCTACATCGCCCAGCCCTATATCCGCCAACGGGTGGCC 
GCGTTCGGCCTGAGCGACGAACGGGAAAGCATGGGTGACACCACCTTCGCGCCGATCATCCTCTGGGACATG 
GGCAAGGACCTGACCCTGGCCGCCGCCATGGAGGTCACCGTGCCCACCGGCAAGTACGATGCCGAGCGGCTG 
GCCAACACCAGCAACAACTTCTACACCTACAAGCCGCTGTTCTCCTTCACCTGGCTGCCCACCGAACGCACC 
GAGCTGTCGCTGAAGGCCACCTACAGCTTCAACATGGAAAACCACGACACCGACTATCGCTCGGGGCAGATC 
TTCCATTTCGACTATTCCGCCAGCTACCGGGTGACCGACAACCTGCGCCTCGGCCTGAACGGCTACTACCTC 
AAGCAGACCACCGACGACAAACAGAACGGCGAGACCGTACGGGTGTTCGGTTTCGGCGAGGAAGTCGACGAT 
GGCGTACGCGGCCAGGTCTTCGCCATCGGCCCGGCCGTGCACCTGACCTTCCTCAAGTACGCCAGCGCGGAG 
ATCCGCTGGGCCAAGGAATTCGACGTGGAGAACCGCCCCGAGGGCGACATGCTCTGGGCCAAGCTGACCATT 
CCGTTCGAACTCTGA