ViewGene
Locus Name:
GeneID:
Location:

GeneID:2211
TrivialName: PA14_64910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64910
PAO1 Ortholog Locus:PA4914
Sequence Length:939
Protein Length:312
Start: 5785100
Stop: 5786038
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08299.1|AE004904_7 (AE004904) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 312/312 (100%), Positives = 312/312 (100%)
Sequence:
ATGCTGAACAAACGCCGCCTGCCGTCGATGACCGCCCTGCAATGCTTCGAAGCGGTAGCCCGGCACCTGAGC
TTCACCCGCGCCGCCGAAGAGTTGAGCCTGACCCAGAGCGCCATGAGCAAGCAGGTCGCGCAACTCGAGGAG
CAGTTGCAGCACGCCCTGTTCCGCCGGGTGCGCAAGCGCCTGCAACTGACCCCGGCCGGCGAGCTGTACCTG
GCCGAGGTACGACGCATCCTGCAGCAGGTAGAGCTGTCCACCCGCTTCCTGCTTTCCTACGGCGGCGAGACC
GAAGTGCTGCGAGTGGCGACCCCGCCGACCTTCGGCGCGCGCTGGCTGATCCCGCAACTGAACGGCTGGCGC
CACCGCCACCCGAACATCCACCTCGACCTGCGCCAGGAACTGGAACCGGACGACCTGCGCCAGGGCCATTGC
GACCTGGCGTTCTTCTTCGGCCCCGGCACCCTGCCGGGCGCCGAGTGCATACGCCTGTTCGGCGAACAACTG
GTGGCGGTCTGCGCGCCATCCCTGCTGCCGGCCGGCGGACTGGACGAGCCGACCCAACTGGCGGGGCTGGTG
CTGCTGCAGAACGCCAGCCGCGCGGAGGCCTGGCACGACTGGTTCGCCAGCCTGGAGCGAAATTGCCAGGGT
TGCTACCACGGTCCACGCTTCGACACCTTCTACATGTGCATCCGCGCCGCCCAGGCCGGTTGCGGGGTAGCC
TTGCTACCGCGCTTCCTGGTCGAGGAGGAACTCGCCGAAGGCAAGCTGGCGATCGCCTGGCCGCACGCCCTG
CCCAGCCAGGAGGCTTACTACCTGGCCTATCCCGAGCATGCCGCGGAAGTCCCCAAGGTGCGCCATTTCATC
GAGTGGATGGTAGAGCGCCTGGAGCAGGAGCAACCCTCAGCGGGCCCCCGCCAGACGCGCCACGGCCCGGTT
TGA
Translation:
MLNKRRLPSMTALQCFEAVARHLSFTRAAEELSLTQSAMSKQVAQLEEQLQHALFRRVRKRLQLTPAGELYL
AEVRRILQQVELSTRFLLSYGGETEVLRVATPPTFGARWLIPQLNGWRHRHPNIHLDLRQELEPDDLRQGHC
DLAFFFGPGTLPGAECIRLFGEQLVAVCAPSLLPAGGLDEPTQLAGLVLLQNASRAEAWHDWFASLERNCQG
CYHGPRFDTFYMCIRAAQAGCGVALLPRFLVEEELAEGKLAIAWPHALPSQEAYYLAYPEHAAEVPKVRHFI
EWMVERLEQEQPSAGPRQTRHGPV*
AnnotationID:2219GeneID:2211
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 15:03:56
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA4914
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58348.1| (AE016873) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 301

 Score =  442 bits (1137), Expect = e-123
 Identities = 213/298 (71%), Positives = 250/298 (83%), Gaps = 1/298 (0%)

>gb|AAN69691.1|AE016605_1 (AE016789) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 298

 Score =  388 bits (997), Expect = e-107
 Identities = 183/296 (61%), Positives = 231/296 (78%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.7% aligned
Score =  151 bits (382), Expect = 9e-38
Identities = 90/299 (30%), Positives = 132/299 (44%), Gaps = 9/299 (3%)

pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues,  99.5% aligned
Score =  110 bits (277), Expect = 2e-25
Identities = 65/211 (30%), Positives = 88/211 (41%), Gaps = 10/211 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4425




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21571




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35105




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2211_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2211
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3757
                           PA4914_tr
                           translation of PA4914
                           312
                           99.99
                           99.99
                           0
                           1652.0
     

     
     
115812
                           gb|AAG08299.1|AE004904_7
                           (AE004904) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           312
                           99.99
                           99.99
                           0
                           1652.0
     

     
     
115813
                           gb|AAO58348.1|
                           (AE016873) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000]
                           313
                           68.37
                           80.51
                           13
                           1135.0
     

     
     
115816
                           dbj|BAC65316.1|
                           (AB088043) regulatory protein [Pseudomonas fluorescens]
                           312
                           59.61
                           71.79
                           20
                           988.0
     

     
     
115815
                           gb|AAN70824.1|AE016726_8
                           (AE016793) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           312
                           59.61
                           73.39
                           16
                           989.0
     

     






      

          
GC ORFID: 45213How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4914Glimmer Score: 

          
Start: 5048781Stop: 5049719

          
Length: 939


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4914 translation of PA4914Homolog Bit Score 640.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7782 (ORF: BLASTX 443.0), t_PA0448 (ORF: BLASTX 212.0), t_PA4914 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAACAAACGCCGCCTGCCGTCGATGACCGCCCTGCAATGCTTCGAAGCGGTAGCCCGGCACCTGAGC 
TTCACCCGCGCCGCCGAAGAGTTGAGCCTGACCCAGAGCGCCATGAGCAAGCAGGTCGCGCAACTCGAGGAG 
CAGTTGCAGCACGCCCTGTTCCGCCGGGTGCGCAAGCGCCTGCAACTGACCCCGGCCGGCGAGCTGTACCTG 
GCCGAGGTACGACGCATCCTGCAGCAGGTAGAGCTGTCCACCCGCTTCCTGCTTTCCTACGGCGGCGAGACC 
GAAGTGCTGCGAGTGGCGACCCCGCCGACCTTCGGCGCGCGCTGGCTGATCCCGCAACTGAACGGCTGGCGC 
CACCGCCACCCGAACATCCACCTCGACCTGCGCCAGGAACTGGAACCGGACGACCTGCGCCAGGGCCATTGC 
GACCTGGCGTTCTTCTTCGGCCCCGGCACCCTGCCGGGCGCCGAGTGCATACGCCTGTTCGGCGAACAACTG 
GTGGCGGTCTGCGCGCCATCCCTGCTGCCGGCCGGCGGACTGGACGAGCCGACCCAACTGGCGGGGCTGGTG 
CTGCTGCAGAACGCCAGCCGCGCGGAGGCCTGGCACGACTGGTTCGCCAGCCTGGAGCGAAATTGCCAGGGT 
TGCTACCACGGTCCACGCTTCGACACCTTCTACATGTGCATCCGCGCCGCCCAGGCCGGTTGCGGGGTAGCC 
TTGCTACCGCGCTTCCTGGTCGAGGAGGAACTCGCCGAAGGCAAGCTGGCGATCGCCTGGCCGCACGCCCTG 
CCCAGCCAGGAGGCTTACTACCTGGCCTATCCCGAGCATGCCGCGGAAGTCCCCAAGGTGCGCCATTTCATC 
GAGTGGATGGTAGAGCGCCTGGAGCAGGAGCAACCCTCAGCGGGCCCCCGCCAGACGCGCCACGGCCCGGTT 
TGA