ViewGene

Locus Name:
GeneID:
Location:

GeneID:221
TrivialName: PA14_36630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36630
PAO1 Ortholog Locus:PA2160
Sequence Length:2151
Protein Length:716
Start: 3261934
Stop: 3264084
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05548.1|AE004643_1 (AE004643) probable glycosyl hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 715/716 (99%), Positives = 716/716 (100%)
Sequence:
ATGAGCAGAAAGCGTAGCCCCGCCCCTTCGCGGATCAGCGAAGGGCACCCCTTCCCCCTTGGCGCCACCTGG
GACGGCCTCGGCGTCAATTTCGCGCTGTTCTCGGCCCACGCGACCAAGGTCGAGCTGTGCCTGTTCGACGCG
CGCGGGGAAAAGGAGATCGAGCGCATCGAATTGCCCGAGTACACCGACGAGATCTGGCACGGCTACCTGCCC
GACGCCCACCCGGGGCAGATCTACGGCTACCGGGTGCACGGTCCCTACGAGCCGGATGCCGGCCACCGCTTC
AATCCCAACAAATTGCTCCTCGATCCCTACGCCAAGCAGTTGGTCGGCCGCCTGCGCTGGTCTGAGGCGCTG
TTCGGCTACACCATCGGCTCGGCCGACGCCGACCTCAGCTTTGACGAGCGCGACAGCGCGCCCTTCGTGCCC
AAGTCGAAGGTCATCGATCCGGCCTTCACCTGGGCCGAGCGCCCGCCGGTACGCGTCCCCTGGGACCGCACG
GTGATCTACGAAGCCCACCTGCGCGGGCTCAGCATGCGCCATCCGCAGGTCCCGGAGGCGGTTCGCGGGACC
TTCGCCGGGCTGATGAACGCCGACCTGCTGGCGCACATCCGCCGGCTCGGGGTGACCAGCGTCGAGCTGCTG
CCGATCCACGGCTTCGTCGACGACAAGCACCTGTTGGAAAACGGCATGAGCAACTACTGGGGCTACAACAGC
ATCGCCTTCTTCGCCCCGCACCCGGCCTACCTCGCCAGCGGCCAGGTCAACGAGTTCAAGGAGATGGTCGCG
CACCTCCACGACGCCGGGCTGGAGCTGATCCTCGACGTGGTCTACAACCACACCGCGGAAGGCAACGAGCTG
GGTCCGACCCTGTGCATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCCGACCAGCGCCGCTAC
TACATCAACGATTCCGGCACCGGAAACACCCTCGACCTCAGCCACCCCTGCGTGTTGCAGATGGTCACCGAC
TCGCTGCGCTACTGGGCCACGGAGATGCGCGTGGACGGCTTCCGCTTCGACCTGGCGACCATCCTCGGCCGC
CATCCGGACGGTTTCGACGAGCGCCACGGCTTCCTCGTCGCCTGCCGCCAGGACCCGGTGCTGAGCAAGTGC
AAGCTGATCGCCGAACCCTGGGATTGCGGCCCCGGCGGCTACCAGGTCGGCGGCTTCCCGCCTGGCTGGGCG
GAATGGAACGACCGTTTCCGCGATTGCGTGCGCGCCTACTGGCGCGGCGACGACGGCATGCTGCCGGAACTG
GCGCGACGCCTAACCGCCTCCGGCGATCTCTACGACCAGCGTGGACGGCGGCCCTACGCGTCGGTGAACTTC
GTCACCGCCCACGACGGTTTCACCCTGCGCGACGTGGTTTCCTACGATCACAAGCACAACGAGGCCAACGGC
GAGAACAACGCCGACGGCAGCGACCACAACCTGTCCTGGAACCACGGCTGCGAGGGCCCCACCGACGACCCG
GAGATCCGCGCCCTGCGCCTGCGCCAGATGCGCAACCTGCTGTCCACCCTGCTGCTGTCCCAGGGCACCCCG
ATGCTGGTCGCCGGCGACGAGTTCAGCCGCACCCAGCAGGGCAACAACAATGTCTATTGCCAGGACAACGAA
CTGGGCTGGATCGACTGGCGGCTGGACGACGAGGGCCGTTCGCTGCTGGCCTTCACCCAGCGCCTGCTGGCC
CTGCGCCAACGCTATCCGATCCTGCGCAGGGGGCGCTTCCTGGTCGGCGAGTACAACGAGGCGCTGGGGGTC
AAGGACGTCACCTGGCTGGCGCCCGGCGGCGAGGAGATGACCGAGGAACACTGGCACGACGAGCACGCCCGC
TGTCTCGGCGTGCTCCTCGATGGCCGCGCGCAACCCACCGGGATCCTGCGCAGCGGTGAGGATGCCACCCTG
CTGCTGATCCTCAATGCCTACCACGACGCGGTGTCCTTCCGTCTTCCCGAGGTGGCCGAAGGCAGCGGCTGG
TCCTGCCTGCTGGATACCCAGCGGCCGGAGGACCCGCTCGGCGAACGCTACCCGTTCGCCAGCGAGTTCCTG
GTCgGCGGCCGCAGTTTCCTGCTGTTCGAGCTACAACCGCCGGGCGCCGGAGCGGAAGGATGA
Translation:
MSRKRSPAPSRISEGHPFPLGATWDGLGVNFALFSAHATKVELCLFDARGEKEIERIELPEYTDEIWHGYLP
DAHPGQIYGYRVHGPYEPDAGHRFNPNKLLLDPYAKQLVGRLRWSEALFGYTIGSADADLSFDERDSAPFVP
KSKVIDPAFTWAERPPVRVPWDRTVIYEAHLRGLSMRHPQVPEAVRGTFAGLMNADLLAHIRRLGVTSVELL
PIHGFVDDKHLLENGMSNYWGYNSIAFFAPHPAYLASGQVNEFKEMVAHLHDAGLELILDVVYNHTAEGNEL
GPTLCMRGIDNASYYRLMPDQRRYYINDSGTGNTLDLSHPCVLQMVTDSLRYWATEMRVDGFRFDLATILGR
HPDGFDERHGFLVACRQDPVLSKCKLIAEPWDCGPGGYQVGGFPPGWAEWNDRFRDCVRAYWRGDDGMLPEL
ARRLTASGDLYDQRGRRPYASVNFVTAHDGFTLRDVVSYDHKHNEANGENNADGSDHNLSWNHGCEGPTDDP
EIRALRLRQMRNLLSTLLLSQGTPMLVAGDEFSRTQQGNNNVYCQDNELGWIDWRLDDEGRSLLAFTQRLLA
LRQRYPILRRGRFLVGEYNEALGVKDVTWLAPGGEEMTEEHWHDEHARCLGVLLDGRAQPTGILRSGEDATL
LLILNAYHDAVSFRLPEVAEGSGWSCLLDTQRPEDPLGERYPFASEFLVGGRSFLLFELQPPGAGAEG*
AnnotationID:231GeneID:221
AnnotatorUID: danlee
Modification Date/Time: 2006-03-13 12:12:23
Gene Name:
Confidence Code:3
GeneProduct:putative glycosyl hydrolase
Cell Localization:()
Synonyms:PA2160, glgX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:putative glycogen debranching enzyme
Functional Category Confidence Code:5
COGs:COG1523,COG0296
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69645.1|AE016598_6 (AE016789) glycogen operon protein GlgX [Pseudomonas putida KT2440]
          Length = 717

 Score = 1160 bits (3001), Expect = 0.0
 Identities = 538/706 (76%), Positives = 611/706 (86%)

>gb|AAM35322.1| (AE011670) glycogen debranching enzyme [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 720

 Score =  941 bits (2432), Expect = 0.0
 Identities = 455/682 (66%), Positives = 531/682 (77%), Gaps = 5/682 (0%)

>gb|AAL20476.1| (AE008768) putative glycosyl hydrolase [Salmonella typhimurium LT2]
          Length = 691

 Score =  798 bits (2062), Expect = 0.0
 Identities = 389/696 (55%), Positives = 487/696 (69%), Gaps = 18/696 (2%)
Structural Features:
COG1523, PulA, Type II secretory pathway, pullulanase PulA and related glycosidases 
[Carbohydrate transport and metabolism]
CD-Length = 697 residues, 100.0% aligned
Score =  871 bits (2253), Expect = 0.0
Identities = 385/724 (53%), Positives = 471/724 (65%), Gaps = 38/724 (5%)

COG0296, GlgB, 1,4-alpha-glucan branching enzyme 
[Carbohydrate transport and metabolism]
CD-Length = 628 residues,  92.7% aligned
Score =  111 bits (280), Expect = 2e-25
Identities = 142/686 (20%), Positives = 213/686 (31%), Gaps = 185/686 (26%)
Genomic Context:
Comment:
ReferenceID:445
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17587
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32567
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:221_cdd.html
URL:
Homologs By Global Alignment
Gene ID:221

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
387 PA2160_tr translation of PA2160 716 99.86 99.99 0 3896.0
22394 gb|AAG05548.1|AE004643_1 (AE004643) probable glycosyl hydrolase [Pseudomonas aeruginosa PAO1] 716 99.86 99.99 0 3896.0
22395 gb|AAN69645.1|AE016598_6 (AE016789) glycogen operon protein GlgX [Pseudomonas putida KT2440] 721 74.61 84.74 9 2992.0
22396 gb|AAO56617.1| (AE016867) glycogen operon protein GlgX [Pseudomonas syringae pv. tomato str. DC3000] 730 72.05 83.97 17 2929.0
22398 gb|AAM39732.1| (AE012138) glycogen debranching enzyme [Xanthomonas campestris pv. campestris str. ATCC 33913] 726 62.94 74.38 16 2421.0
GC ORFID: 43223How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2160Glimmer Score:
Start: 1691980Stop: 1689830
Length: 2151
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2160 translation of PA2160Homolog Bit Score 1505.0
Other Homologs: t_PA2160 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAGAAAGCGTAGCCCCGCCCCTTCGCGGATCAGCGAAGGGCACCCCTTCCCCCTTGGCGCCACCTGG
GACGGCCTCGGCGTCAATTTCGCGCTGTTCTCGGCCCACGCGACCAAGGTCGAGCTGTGCCTGTTCGACGCG
CGCGGGGAAAAGGAGATCGAGCGCATCGAATTGCCCGAGTACACCGACGAGATCTGGCACGGCTACCTGCCC
GACGCCCACCCGGGGCAGATCTACGGCTACCGGGTGCACGGTCCCTACGAGCCGGATGCCGGCCACCGCTTC
AATCCCAACAAATTGCTCCTCGATCCCTACGCCAAGCAGTTGGTCGGCCGCCTGCGCTGGTCTGAGGCGCTG
TTCGGCTACACCATCGGCTCGGCCGACGCCGACCTCAGCTTTGACGAGCGCGACAGCGCGCCCTTCGTGCCC
AAGTCGAAGGTCATCGATCCGGCCTTCACCTGGGCCGAGCGCCCGCCGGTACGCGTCCCCTGGGACCGCACG
GTGATCTACGAAGCCCACCTGCGCGGGCTCAGCATGCGCCATCCGCAGGTCCCGGAGGCGGTTCGCGGGACC
TTCGCCGGGCTGATGAACGCCGACCTGCTGGCGCACATCCGCCGGCTCGGGGTGACCAGCGTCGAGCTGCTG
CCGATCCACGGCTTCGTCGACGACAAGCACCTGTTGGAAAACGGCATGAGCAACTACTGGGGCTACAACAGC
ATCGCCTTCTTCGCCCCGCACCCGGCCTACCTCGCCAGCGGCCAGGTCAACGAGTTCAAGGAGATGGTCGCG
CACCTCCACGACGCCGGGCTGGAGCTGATCCTCGACGTGGTCTACAACCACACCGCGGAAGGCAACGAGCTG
GGTCCGACCCTGTGCATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCCGACCAGCGCCGCTAC
TACATCAACGATTCCGGCACCGGAAACACCCTCGACCTCAGCCACCCCTGCGTGTTGCAGATGGTCACCGAC
TCGCTGCGCTACTGGGCCACGGAGATGCGCGTGGACGGCTTCCGCTTCGACCTGGCGACCATCCTCGGCCGC
CATCCGGACGGTTTCGACGAGCGCCACGGCTTCCTCGTCGCCTGCCGCCAGGACCCGGTGCTGAGCAAGTGC
AAGCTGATCGCCGAACCCTGGGATTGCGGCCCCGGCGGCTACCAGGTCGGCGGCTTCCCGCCTGGCTGGGCG
GAATGGAACGACCGTTTCCGCGATTGCGTGCGCGCCTACTGGCGCGGCGACGACGGCATGCTGCCGGAACTG
GCGCGACGCCTAACCGCCTCCGGCGATCTCTACGACCAGCGTGGACGGCGGCCCTACGCGTCGGTGAACTTC
GTCACCGCCCACGACGGTTTCACCCTGCGCGACGTGGTTTCCTACGATCACAAGCACAACGAGGCCAACGGC
GAGAACAACGCCGACGGCAGCGACCACAACCTGTCCTGGAACCACGGCTGCGAGGGCCCCACCGACGACCCG
GAGATCCGCGCCCTGCGCCTGCGCCAGATGCGCAACCTGCTGTCCACCCTGCTGCTGTCCCAGGGCACCCCG
ATGCTGGTCGCCGGCGACGAGTTCAGCCGCACCCAGCAGGGCAACAACAATGTCTATTGCCAGGACAACGAA
CTGGGCTGGATCGACTGGCGGCTGGACGACGAGGGCCGTTCGCTGCTGGCCTTCACCCAGCGCCTGCTGGCC
CTGCGCCAACGCTATCCGATCCTGCGCAGGGGGCGCTTCCTGGTCGGCGAGTACAACGAGGCGCTGGGGGTC
AAGGACGTCACCTGGCTGGCGCCCGGCGGCGAGGAGATGACCGAGGAACACTGGCACGACGAGCACGCCCGC
TGTCTCGGCGTGCTCCTCGATGGCCGCGCGCAACCCACCGGGATCCTGCGCAGCGGTGAGGATGCCACCCTG
CTGCTGATCCTCAATGCCTACCACGACGCGGTGTCCTTCCGTCTTCCCGAGGTGGCCGAAGGCAGCGGCTGG
TCCTGCCTGCTGGATACCCAGCGGCCGGAGGACCCGCTCGGCGAACGCTACCCGTTCGCCAGCGAGTTCCTG
GTCgGCGGCCGCAGTTTCCTGCTGTTCGAGCTACAACCGCCGGGCGCCGGAGCGGAAGGATGA