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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG05548.1|AE004643_1 (AE004643) probable glycosyl hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 715/716 (99%), Positives = 716/716 (100%)
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Sequence:
ATGAGCAGAAAGCGTAGCCCCGCCCCTTCGCGGATCAGCGAAGGGCACCCCTTCCCCCTTGGCGCCACCTGG
GACGGCCTCGGCGTCAATTTCGCGCTGTTCTCGGCCCACGCGACCAAGGTCGAGCTGTGCCTGTTCGACGCG
CGCGGGGAAAAGGAGATCGAGCGCATCGAATTGCCCGAGTACACCGACGAGATCTGGCACGGCTACCTGCCC
GACGCCCACCCGGGGCAGATCTACGGCTACCGGGTGCACGGTCCCTACGAGCCGGATGCCGGCCACCGCTTC
AATCCCAACAAATTGCTCCTCGATCCCTACGCCAAGCAGTTGGTCGGCCGCCTGCGCTGGTCTGAGGCGCTG
TTCGGCTACACCATCGGCTCGGCCGACGCCGACCTCAGCTTTGACGAGCGCGACAGCGCGCCCTTCGTGCCC
AAGTCGAAGGTCATCGATCCGGCCTTCACCTGGGCCGAGCGCCCGCCGGTACGCGTCCCCTGGGACCGCACG
GTGATCTACGAAGCCCACCTGCGCGGGCTCAGCATGCGCCATCCGCAGGTCCCGGAGGCGGTTCGCGGGACC
TTCGCCGGGCTGATGAACGCCGACCTGCTGGCGCACATCCGCCGGCTCGGGGTGACCAGCGTCGAGCTGCTG
CCGATCCACGGCTTCGTCGACGACAAGCACCTGTTGGAAAACGGCATGAGCAACTACTGGGGCTACAACAGC
ATCGCCTTCTTCGCCCCGCACCCGGCCTACCTCGCCAGCGGCCAGGTCAACGAGTTCAAGGAGATGGTCGCG
CACCTCCACGACGCCGGGCTGGAGCTGATCCTCGACGTGGTCTACAACCACACCGCGGAAGGCAACGAGCTG
GGTCCGACCCTGTGCATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCCGACCAGCGCCGCTAC
TACATCAACGATTCCGGCACCGGAAACACCCTCGACCTCAGCCACCCCTGCGTGTTGCAGATGGTCACCGAC
TCGCTGCGCTACTGGGCCACGGAGATGCGCGTGGACGGCTTCCGCTTCGACCTGGCGACCATCCTCGGCCGC
CATCCGGACGGTTTCGACGAGCGCCACGGCTTCCTCGTCGCCTGCCGCCAGGACCCGGTGCTGAGCAAGTGC
AAGCTGATCGCCGAACCCTGGGATTGCGGCCCCGGCGGCTACCAGGTCGGCGGCTTCCCGCCTGGCTGGGCG
GAATGGAACGACCGTTTCCGCGATTGCGTGCGCGCCTACTGGCGCGGCGACGACGGCATGCTGCCGGAACTG
GCGCGACGCCTAACCGCCTCCGGCGATCTCTACGACCAGCGTGGACGGCGGCCCTACGCGTCGGTGAACTTC
GTCACCGCCCACGACGGTTTCACCCTGCGCGACGTGGTTTCCTACGATCACAAGCACAACGAGGCCAACGGC
GAGAACAACGCCGACGGCAGCGACCACAACCTGTCCTGGAACCACGGCTGCGAGGGCCCCACCGACGACCCG
GAGATCCGCGCCCTGCGCCTGCGCCAGATGCGCAACCTGCTGTCCACCCTGCTGCTGTCCCAGGGCACCCCG
ATGCTGGTCGCCGGCGACGAGTTCAGCCGCACCCAGCAGGGCAACAACAATGTCTATTGCCAGGACAACGAA
CTGGGCTGGATCGACTGGCGGCTGGACGACGAGGGCCGTTCGCTGCTGGCCTTCACCCAGCGCCTGCTGGCC
CTGCGCCAACGCTATCCGATCCTGCGCAGGGGGCGCTTCCTGGTCGGCGAGTACAACGAGGCGCTGGGGGTC
AAGGACGTCACCTGGCTGGCGCCCGGCGGCGAGGAGATGACCGAGGAACACTGGCACGACGAGCACGCCCGC
TGTCTCGGCGTGCTCCTCGATGGCCGCGCGCAACCCACCGGGATCCTGCGCAGCGGTGAGGATGCCACCCTG
CTGCTGATCCTCAATGCCTACCACGACGCGGTGTCCTTCCGTCTTCCCGAGGTGGCCGAAGGCAGCGGCTGG
TCCTGCCTGCTGGATACCCAGCGGCCGGAGGACCCGCTCGGCGAACGCTACCCGTTCGCCAGCGAGTTCCTG
GTCgGCGGCCGCAGTTTCCTGCTGTTCGAGCTACAACCGCCGGGCGCCGGAGCGGAAGGATGA |
Translation:
MSRKRSPAPSRISEGHPFPLGATWDGLGVNFALFSAHATKVELCLFDARGEKEIERIELPEYTDEIWHGYLP
DAHPGQIYGYRVHGPYEPDAGHRFNPNKLLLDPYAKQLVGRLRWSEALFGYTIGSADADLSFDERDSAPFVP
KSKVIDPAFTWAERPPVRVPWDRTVIYEAHLRGLSMRHPQVPEAVRGTFAGLMNADLLAHIRRLGVTSVELL
PIHGFVDDKHLLENGMSNYWGYNSIAFFAPHPAYLASGQVNEFKEMVAHLHDAGLELILDVVYNHTAEGNEL
GPTLCMRGIDNASYYRLMPDQRRYYINDSGTGNTLDLSHPCVLQMVTDSLRYWATEMRVDGFRFDLATILGR
HPDGFDERHGFLVACRQDPVLSKCKLIAEPWDCGPGGYQVGGFPPGWAEWNDRFRDCVRAYWRGDDGMLPEL
ARRLTASGDLYDQRGRRPYASVNFVTAHDGFTLRDVVSYDHKHNEANGENNADGSDHNLSWNHGCEGPTDDP
EIRALRLRQMRNLLSTLLLSQGTPMLVAGDEFSRTQQGNNNVYCQDNELGWIDWRLDDEGRSLLAFTQRLLA
LRQRYPILRRGRFLVGEYNEALGVKDVTWLAPGGEEMTEEHWHDEHARCLGVLLDGRAQPTGILRSGEDATL
LLILNAYHDAVSFRLPEVAEGSGWSCLLDTQRPEDPLGERYPFASEFLVGGRSFLLFELQPPGAGAEG* |
AnnotationID:231 | GeneID:221 |
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Modification Date/Time: |
2006-03-13 12:12:23 |
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GeneProduct: | putative glycosyl hydrolase |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (5) Carbon compound catabolism |
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Alternate Gene Product Name: | putative glycogen debranching enzyme |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | transport of small molecules |
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Homology: | >gb|AAN69645.1|AE016598_6 (AE016789) glycogen operon protein GlgX [Pseudomonas putida KT2440]
Length = 717
Score = 1160 bits (3001), Expect = 0.0
Identities = 538/706 (76%), Positives = 611/706 (86%)
>gb|AAM35322.1| (AE011670) glycogen debranching enzyme [Xanthomonas axonopodis pv.
citri str. 306]
Length = 720
Score = 941 bits (2432), Expect = 0.0
Identities = 455/682 (66%), Positives = 531/682 (77%), Gaps = 5/682 (0%)
>gb|AAL20476.1| (AE008768) putative glycosyl hydrolase [Salmonella typhimurium LT2]
Length = 691
Score = 798 bits (2062), Expect = 0.0
Identities = 389/696 (55%), Positives = 487/696 (69%), Gaps = 18/696 (2%) |
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Structural Features: | COG1523, PulA, Type II secretory pathway, pullulanase PulA and related glycosidases
[Carbohydrate transport and metabolism]
CD-Length = 697 residues, 100.0% aligned
Score = 871 bits (2253), Expect = 0.0
Identities = 385/724 (53%), Positives = 471/724 (65%), Gaps = 38/724 (5%)
COG0296, GlgB, 1,4-alpha-glucan branching enzyme
[Carbohydrate transport and metabolism]
CD-Length = 628 residues, 92.7% aligned
Score = 111 bits (280), Expect = 2e-25
Identities = 142/686 (20%), Positives = 213/686 (31%), Gaps = 185/686 (26%) |
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