ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2207

TrivialName: PA14_40080

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_40080

PAO1 Ortholog Locus: PA1889

Sequence Length: 984

Protein Length: 327

Start: 3572848

Stop: 3571865

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05278.1|AE004615_1 (AE004615) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 323/327 (98%), Positives = 324/327 (99%)

Sequence:

GTGGGGCGAACTGTCGAAGACGTTGACATGCTGAACCACCACTTCCGTGTCTGTTCTGCAACTGTCTATAGA
CCGCCGGGGGATGGGTGTCAAAGTGCCACTTCGCAGCCTTCCGCATGGTGGATGGCTGCGAAGGAGAGTCGA
TCAGGCCAGTTGCGCCGGGTCGAGCATGTCGCTCTCGAAGGTCATCCAGCCGCCGTTCTCGCTGGCCGCGCC
GTCGAGGATCGGGCCGTAGTAGGTGAGGCCGATGGTCAGGCTGAAGCAGATATGGGTGGCGTTCTCCGGGGC
GTCCAGCTGGCCTTCGAAGTGCAGCTTGAGCACGCCCGGCTCGACGCTTTCCAGGCCGATGGCGACGTTCGG
GTTGTCCACGGCCTCGCTTTCGCGGCCGCGTTGCTCGGCGCTGACGGTGAGGGTCACGGTGTCTCGGTACAT
GTCTTGCTCCAGTTGGCGTGGGGCCGGCGTCGCCAGCGCGGCGGACAGACTACTGGCAGACGCGCCGGCTGG
CCAGTGCTGGCTGCGGCAGGCGCCGCGCGGGGCCTGGGAATCATTCGCCGGCGGCGCAGTCCAACTGCGCAT
CACCAACCGACCCCCGAGGGGATGATGAAGCTACCCGTGCTCGCTGTATTGGGCGCCGCGCTGCTGTTGAGC
GCCTGCGCGAAGAAGGAGGCCGAGGCCTGTGCCTCGCCGGACGTGAAGGACCAACTGATGCGGATCTTCCTC
CAGGGCGCGATCACCGAGCGCTCGCCGGAGTTCAAGGACAGCGCGCTGCGCGACGTGGCGATCCTCGAGAAG
GATCCCGACAGCGGCGTGCTGTCCTGTGTCGGCACCCTCAGCGTGCCGGCCGGCCAGCAGGTGGTCGAGGGC
GTCCTGCAATATCGCATCGCCCCGGTGGCCAAGTCCGACTACGACTACCTGCTGCTGGATACCGCCGGCGCC
AACACCACCGCCCTGGCGCAGCGCCTGAACAAGGCGCTCGGCCAGTGA

Translation:

MGRTVEDVDMLNHHFRVCSATVYRPPGDGCQSATSQPSAWWMAAKESRSGQLRRVEHVALEGHPAAVLAGRA
VEDRAVVGEADGQAEADMGGVLRGVQLAFEVQLEHARLDAFQADGDVRVVHGLAFAAALLGADGEGHGVSVH
VLLQLAWGRRRQRGGQTTGRRAGWPVLAAAGAARGLGIIRRRRSPTAHHQPTPEGMMKLPVLAVLGAALLLS
ACAKKEAEACASPDVKDQLMRIFLQGAITERSPEFKDSALRDVAILEKDPDSGVLSCVGTLSVPAGQQVVEG
VLQYRIAPVAKSDYDYLLLDTAGANTTALAQRLNKALGQ*

AnnotationID:2215 GeneID:2207

AnnotatorUID: diggins

Modification Date/Time: 2005-03-02 09:09:08

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA1889

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:14537

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:21563

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:2207

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3753 PA1889_tr translation of PA1889 327 98.77 99.08 0 1650.0

115757 gb|AAG05278.1|AE004615_1 (AE004615) hypothetical protein PA1889 [Pseudomonas aeruginosa PAO1] 327 98.47 99.08 0 1647.0

GC ORFID: `45209`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1889`	Glimmer Score:
Start: `1381062`	Stop: `1382045`
Length: `984`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1889 translation of PA1889`	Homolog Bit Score `640.0`
Other Homologs: `t_PA1889 (ORF: GLIMMER)`
GC ORF Sequence
GTGGGGCGAACTGTCGAAGACGTTGACATGCTGAACCACCACTTCCGTGTCTGTTCTGCAACTGTCTATAGA CCGCCGGGGGATGGGTGTCAAAGTGCCACTTCGCAGCCTTCCGCATGGTGGATGGCTGCGAAGGAGAGTCGA TCAGGCCAGTTGCGCCGGGTCGAGCATGTCGCTCTCGAAGGTCATCCAGCCGCCGTTCTCGCTGGCCGCGCC GTCGAGGATCGGGCCGTAGTAGGTGAGGCCGATGGTCAGGCTGAAGCAGATATGGGTGGCGTTCTCCGGGGC GTCCAGCTGGCCTTCGAAGTGCAGCTTGAGCACGCCCGGCTCGACGCTTTCCAGGCCGATGGCGACGTTCGG GTTGTCCACGGCCTCGCTTTCGCGGCCGCGTTGCTCGGCGCTGACGGTGAGGGTCACGGTGTCTCGGTACAT GTCTTGCTCCAGTTGGCGTGGGGCCGGCGTCGCCAGCGCGGCGGACAGACTACTGGCAGACGCGCCGGCTGG CCAGTGCTGGCTGCGGCAGGCGCCGCGCGGGGCCTGGGAATCATTCGCCGGCGGCGCAGTCCAACTGCGCAT CACCAACCGACCCCCGAGGGGATGATGAAGCTACCCGTGCTCGCTGTATTGGGCGCCGCGCTGCTGTTGAGC GCCTGCGCGAAGAAGGAGGCCGAGGCCTGTGCCTCGCCGGACGTGAAGGACCAACTGATGCGGATCTTCCTC CAGGGCGCGATCACCGAGCGCTCGCCGGAGTTCAAGGACAGCGCGCTGCGCGACGTGGCGATCCTCGAGAAG GATCCCGACAGCGGCGTGCTGTCCTGTGTCGGCACCCTCAGCGTGCCGGCCGGCCAGCAGGTGGTCGAGGGC GTCCTGCAATATCGCATCGCCCCGGTGGCCAAGTCCGACTACGACTACCTGCTGCTGGATACCGCCGGCGCC AACACCACCGCCCTGGCGCAGCGCCTGAACAAGGCGCTCGGCCAGTGA