ViewGene
Locus Name:
GeneID:
Location:

GeneID:2206
TrivialName: PA14_49760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49760
PAO1 Ortholog Locus:PA1130
Sequence Length:978
Protein Length:325
Start: 4426859
Stop: 4427836
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04519.1|AE004543_3 (AE004543) rhamnosyltransferase 2 [Pseudomonas aeruginosa PAO1]
Identities = 322/325 (99%), Positives = 322/325 (99%)
Sequence:
ATGGACCGGATAGACATGGGCGTGCTGGTGGTGCTGTTCAATCCTGGCGACGACGACCTGGAACACCTTGGC
GAACTGGCGGCGGCGTTTCCGCAACTGCGCTTCCTCGCCGTCGACAACTCACCGCACAGCGATCCGCAGCGC
AATGCCCGGCTGCGCGGGCAAGGCATCGCCGTGCTGCACCACGGCAACCGGCAGGGCATCGCCGGCGCCTTC
AACCAGGGGCTCGACGCGCTGTTCCGGCGTGGCGTGCAGGGTGTGCTGCTGCTCGACCAGGACTCCCGTCCC
GGCGGCGCCTTCCTCGCCGCCCAGTGGCGCAACCTGCAGGCGCGCAACGGTCAGGCCTGCCTGCTCGGCCCA
CGGATCTTCGACCGGGGCGACCGGCGCTTCCTGCCGGCCATCCACCTCGACGGGCTGGCGCTCAGGCAACTG
TCCCTGGACGGCCTGACGATCCCACAGCGCACCTCGTTCCTGATCTCCTCCGGCTGCCTGCTGACCCGCGAG
GCCTACCAGCGCCTCGGCCACTTCGACGAGGAACTGTTCATCGACCATGTGGACACCGAGTACAGCCTGCGC
GCCCAGGCGCTGGACGTGCCCCTGTACGTCGACCCGCGGCTGGTCCTCGAGCACCGCATCGGCACGCGCAAG
ACCCGCCGCCTCGGCGGTCTCAGCCTCAGCGCGATGAACCACGCCCCGCTGCGCCGCTACTACCTGGCGCGC
AACGGCCTGCTGGTCCTGCGCCGCTACGCCCGGTCCTCGCCGCTGGCCCTGCTGGCGAACCTGCCGACCCTG
ACCCAGGGCCTCGCGGTGCTCCTGCTCGAACGCGACAAGCTGCTCAAGCTGCGCTGCCTGGGCTGGGGCCTG
TGGGACGGCCTGCGGGGGCGCGGCGGCGCACTGGAGCGCAACCGCCCGCGCCTGCTGAAGCGCCTCGCCGGT
CCGGCCGTGGCGTCCGTAGCTTCCGGCAAGGCCAAGGCCTAG
Translation:
MDRIDMGVLVVLFNPGDDDLEHLGELAAAFPQLRFLAVDNSPHSDPQRNARLRGQGIAVLHHGNRQGIAGAF
NQGLDALFRRGVQGVLLLDQDSRPGGAFLAAQWRNLQARNGQACLLGPRIFDRGDRRFLPAIHLDGLALRQL
SLDGLTIPQRTSFLISSGCLLTREAYQRLGHFDEELFIDHVDTEYSLRAQALDVPLYVDPRLVLEHRIGTRK
TRRLGGLSLSAMNHAPLRRYYLARNGLLVLRRYARSSPLALLANLPTLTQGLAVLLLERDKLLKLRCLGWGL
WDGLRGRGGALERNRPRLLKRLAGPAVASVASGKAKA*
AnnotationID:2214GeneID:2206
AnnotatorUID: danlee
Modification Date/Time: 2004-09-07 13:01:26
Gene Name:rhlC
Confidence Code:1
GeneProduct:rhamnosyltransferase 2
Cell Localization:()
Synonyms:PA1130
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1216, pfam00535
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1216, Predicted glycosyltransferases. Score: 137, 2e-33
pfam00535, Glycos_transf_2, Glycosyl transferase. Score: 42.9, 5e-05






   
Genomic Context:






   
Comment:


















    ReferenceID:4415




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21561




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34203




  
Author/Investigator(s):
        Rahim R, Ochsner UA, Olvera C, Graninger M, Messner P, Lam JS, Soberon-Chavez G.





  
Title:
        Cloning and functional characterization of the Pseudomonas aeruginosa rhlC gene that encodes rhamnosyltransferase 2, an enzyme responsible for di-rhamnolipid biosynthesis.




  
PubMed:
        21260078


MedLine:
        




    
Source:
Mol Microbiol. 2001 May;40(3):708-18.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2206
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3752
                           PA1130_tr
                           translation of PA1130
                           325
                           99.07
                           99.07
                           0
                           1652.0
     

     
     
115756
                           gb|AAG04519.1|AE004543_3
                           (AE004543) rhamnosyltransferase 2 [Pseudomonas aeruginosa PAO1]
                           325
                           99.07
                           99.07
                           0
                           1652.0
     

     






      

          
GC ORFID: 45208How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1130Glimmer Score: 

          
Start: 527049Stop: 526072

          
Length: 978


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1130 translation of PA1130Homolog Bit Score 640.0

          
Other Homologs:  t_PA1130 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACCGGATAGACATGGGCGTGCTGGTGGTGCTGTTCAATCCTGGCGACGACGACCTGGAACACCTTGGC 
GAACTGGCGGCGGCGTTTCCGCAACTGCGCTTCCTCGCCGTCGACAACTCACCGCACAGCGATCCGCAGCGC 
AATGCCCGGCTGCGCGGGCAAGGCATCGCCGTGCTGCACCACGGCAACCGGCAGGGCATCGCCGGCGCCTTC 
AACCAGGGGCTCGACGCGCTGTTCCGGCGTGGCGTGCAGGGTGTGCTGCTGCTCGACCAGGACTCCCGTCCC 
GGCGGCGCCTTCCTCGCCGCCCAGTGGCGCAACCTGCAGGCGCGCAACGGTCAGGCCTGCCTGCTCGGCCCA 
CGGATCTTCGACCGGGGCGACCGGCGCTTCCTGCCGGCCATCCACCTCGACGGGCTGGCGCTCAGGCAACTG 
TCCCTGGACGGCCTGACGATCCCACAGCGCACCTCGTTCCTGATCTCCTCCGGCTGCCTGCTGACCCGCGAG 
GCCTACCAGCGCCTCGGCCACTTCGACGAGGAACTGTTCATCGACCATGTGGACACCGAGTACAGCCTGCGC 
GCCCAGGCGCTGGACGTGCCCCTGTACGTCGACCCGCGGCTGGTCCTCGAGCACCGCATCGGCACGCGCAAG 
ACCCGCCGCCTCGGCGGTCTCAGCCTCAGCGCGATGAACCACGCCCCGCTGCGCCGCTACTACCTGGCGCGC 
AACGGCCTGCTGGTCCTGCGCCGCTACGCCCGGTCCTCGCCGCTGGCCCTGCTGGCGAACCTGCCGACCCTG 
ACCCAGGGCCTCGCGGTGCTCCTGCTCGAACGCGACAAGCTGCTCAAGCTGCGCTGCCTGGGCTGGGGCCTG 
TGGGACGGCCTGCGGGGGCGCGGCGGCGCACTGGAGCGCAACCGCCCGCGCCTGCTGAAGCGCCTCGCCGGT 
CCGGCCGTGGCGTCCGTAGCTTCCGGCAAGGCCAAGGCCTAG