ViewGene
Locus Name:
GeneID:
Location:

GeneID:2204
TrivialName: PA14_59990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59990
PAO1 Ortholog Locus:
Sequence Length:939
Protein Length:312
Start: 5341788
Stop: 5342726
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84144.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 308/312 (98%), Positives = 311/312 (99%)
Sequence:
ATGACCAGCCTCAACCTCCGCCGCCTGGCAGCGGCGGCCGCCACCTTCAGCCTCTCGTTCACGGCCTCGGCC
GCGATCAACAGCGCTGCCATCGTCTCCTCCACCCTTTCCCCTCAGTGCCTCGAATACAAGGTCGTCGGGATC
TGTTACTGGCTGCTCTGCGGCCCGCATGGCTGCAAAGTGAAGACGTCGGTCAAGGTCCGCCACTACGTGCCT
GACGCAGTCGTCTCCAGCTACGCGAATACCGGGAGCAACCCCTGGACCGAGGTATCGGCGCTGGGTACACCG
AATCCACTCGCCCAGGCCGGCAATGACGCGACCACAAACTACAAGGCCGAGAACAGCATCGGCCGCTTCAAG
GAAGCGGATGTGATCGGCCATCCTGGTGGCGCCACGTTCAGCCGGTTCGCCAGCGCCTCTGGGTACGTTTGC
CCTGGCGCCACCGTCCCGCTGGTGCCGTACTTTCTCAGCACACTGGACGCCATTGGCTGGCGGCATGGAATT
CCCGAGCAGGTGTACCCCGAAGCGTTGGTCCCAGGGCTGCGCGAGGTGGGTGGAATCTTCTCCGGCGACATG
TGGGGGAACCTCTATCCGCGCAGCGGCTTCCTGCACCAGACCGACGACTACAAGACGGCAGCCGTCATCGCC
CAGCGCGCCGGCGATATCACCACGCGAATCGGCCAGCTCCACGTCTACCTCCCCATGCGCGCAGCCCCCAAG
GACGGCTACTGGCCGGCGGGCGAGCTGAAAGAGGGCGATGCCTCGACCGGGAAATGGCAGGAGCTGACCCCA
TCCCTGAGCCTCAACTGCGCGGTGTTTCCCAACTCTGGGCCGAAGACGCAAGCCGTCGACGGCGATTACGCC
TGGGCGCTCTGGCGTCCCTACTCCTGCTGCCAGCGCAAGGGGCAGATCTTCCTCGGCAGTACCGACTTCCAA
TAA
Translation:
MTSLNLRRLAAAAATFSLSFTASAAINSAAIVSSTLSPQCLEYKVVGICYWLLCGPHGCKVKTSVKVRHYVP
DAVVSSYANTGSNPWTEVSALGTPNPLAQAGNDATTNYKAENSIGRFKEADVIGHPGGATFSRFASASGYVC
PGATVPLVPYFLSTLDAIGWRHGIPEQVYPEALVPGLREVGGIFSGDMWGNLYPRSGFLHQTDDYKTAAVIA
QRAGDITTRIGQLHVYLPMRAAPKDGYWPAGELKEGDASTGKWQELTPSLSLNCAVFPNSGPKTQAVDGDYA
WALWRPYSCCQRKGQIFLGSTDFQ*
AnnotationID:2212GeneID:2204
AnnotatorUID: diggins
Modification Date/Time: 2006-01-31 07:07:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:4411




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21557




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2204
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
115737
                           gb|AAP94687.1|
                           (AY258138) conserved hypothetical protein [Pseudomonas aeruginosa]
                           312
                           99.35
                           99.67
                           0
                           1665.0
     

     
     
115738
                           gb|AAP84144.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           312
                           98.71
                           99.67
                           0
                           1653.0
     

     
     
115739
                           gb|AAP14350.1|
                           (AY253670) unknown [Pseudomonas syringae]
                           315
                           69.20
                           81.26
                           6
                           1219.0
     

     
     
115740
                           gb|AAO54384.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           315
                           68.88
                           80.00
                           6
                           1209.0
     

     
     
115741
                           emb|CAE92907.1|
                           (AJ617740) hypothetical protein [Pseudomonas putida]
                           315
                           64.76
                           76.19
                           3
                           1128.0
     

     






      

          
GC ORFID: 45206How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL017Glimmer Score: 

          
Start: 4605467Stop: 4606405

          
Length: 939


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_RL017 312 Homolog: XCC3115 / Hypothetical protein / X.campestris pv. campestris / ATCC 3391 (AAM42386) translation of RL017Homolog Bit Score 641.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1656 (ORF: BLASTX 468.0), t_RL017 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAGCCTCAACCTCCGCCGCCTGGCAGCGGCGGCCGCCACCTTCAGCCTCTCGTTCACGGCCTCGGCC 
GCGATCAACAGCGCTGCCATCGTCTCCTCCACCCTTTCCCCTCAGTGCCTCGAATACAAGGTCGTCGGGATC 
TGTTACTGGCTGCTCTGCGGCCCGCATGGCTGCAAAGTGAAGACGTCGGTCAAGGTCCGCCACTACGTGCCT 
GACGCAGTCGTCTCCAGCTACGCGAATACCGGGAGCAACCCCTGGACCGAGGTATCGGCGCTGGGTACACCG 
AATCCACTCGCCCAGGCCGGCAATGACGCGACCACAAACTACAAGGCCGAGAACAGCATCGGCCGCTTCAAG 
GAAGCGGATGTGATCGGCCATCCTGGTGGCGCCACGTTCAGCCGGTTCGCCAGCGCCTCTGGGTACGTTTGC 
CCTGGCGCCACCGTCCCGCTGGTGCCGTACTTTCTCAGCACACTGGACGCCATTGGCTGGCGGCATGGAATT 
CCCGAGCAGGTGTACCCCGAAGCGTTGGTCCCAGGGCTGCGCGAGGTGGGTGGAATCTTCTCCGGCGACATG 
TGGGGGAACCTCTATCCGCGCAGCGGCTTCCTGCACCAGACCGACGACTACAAGACGGCAGCCGTCATCGCC 
CAGCGCGCCGGCGATATCACCACGCGAATCGGCCAGCTCCACGTCTACCTCCCCATGCGCGCAGCCCCCAAG 
GACGGCTACTGGCCGGCGGGCGAGCTGAAAGAGGGCGATGCCTCGACCGGGAAATGGCAGGAGCTGACCCCA 
TCCCTGAGCCTCAACTGCGCGGTGTTTCCCAACTCTGGGCCGAAGACGCAAGCCGTCGACGGCGATTACGCC 
TGGGCGCTCTGGCGTCCCTACTCCTGCTGCCAGCGCAAGGGGCAGATCTTCCTCGGCAGTACCGACTTCCAA 
TAA