ViewGene
Locus Name:
GeneID:
Location:

GeneID:2202
TrivialName: PA14_56050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56050
PAO1 Ortholog Locus:PA4313
Sequence Length:1002
Protein Length:333
Start: 5004899
Stop: 5005900
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07701.1|AE004847_8 (AE004847) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 332/333 (99%), Positives = 332/333 (99%)
Sequence:
ATGAGTCGAGGCTGGTTACTGCTGTTCGGTTTGATCGGTGCCTCGCTGATTCCGCTGGTGCTCGGCGGCAGC
GACATGTTCCCGCGCTTGCGCGCCTTCCCGCTGGACAGCCTGCTGCTGATGTTCGGCATGATCGTGGTCTGC
TGGTTCATCAACGGCCTACGCCTGCGCTTGCTGCTCGCCGGGCGCGCCGGCAAGCTCGGGCAGTTGCAGAGC
GTCGGCATCATCATGGCCAGCGAATTCGCCTTCTGCGCCACTCCGGGCGGCAGCGGCGGGCCGTTGACCCTG
ATGGCGTTGCTGGCCCGGCGCGGCCTGCGCCCGGCACAGACCAGCGCGGTGTTCGCGGTCGACCAATTGGCC
GACCTGACGTTCTTCCTCTGCGCCCTCGGCGCGATCCTGATCTATGCCCTCAGCCATTCGCTGAGCCCGAAC
ATGGAATCGAGCCTGATCTTCAGCGCGGTATTCCTGGTCGGCCTGTTCGTCGGCGCGGTAATGCTGATCCGC
TACCTGCACCAGGTGATCCGCTTCAACGGGCGGGTTCTAGCGCGGCTCGGCGTGTCATCGCGCAAGCGCCTG
CACTGGGGCCGCAAGATCCTGCATTTCCGCATTGCCCTGCACGACAGCCTGCGCCTGCCGAAACGACGCCTG
CTGGCGGTCTTCCTTCTCAGCAGTACGCACTGGCTGCTGCGCTTCAGCGTGCTCGACCTGACCTTGCGCGGC
CTGGGAGTGGACATCCAGTGGGCCTGGACCTTCCTGATCCAGATGGTCTCGCTCAGCGCCGGACAGCTCTCG
CTGATCCCCGGCGGCGCCGGCGGCACCGAGCTGACCTCGGCGGCCCTGCTGGCCCCCATGATCGGCAAGTCG
ACGGCGGCGGCGGCCATCGTCATCTGGCGAGCGGTGACCTTCTATTTCTACCTCGTCGCCGGCGGCCCGGTG
TTCGCCGTGCTCGCCGGACGCCCGCTGCTGAAGAAGCTGATCAGCAGTCGCGAGGCTTCTTCCTGA
Translation:
MSRGWLLLFGLIGASLIPLVLGGSDMFPRLRAFPLDSLLLMFGMIVVCWFINGLRLRLLLAGRAGKLGQLQS
VGIIMASEFAFCATPGGSGGPLTLMALLARRGLRPAQTSAVFAVDQLADLTFFLCALGAILIYALSHSLSPN
MESSLIFSAVFLVGLFVGAVMLIRYLHQVIRFNGRVLARLGVSSRKRLHWGRKILHFRIALHDSLRLPKRRL
LAVFLLSSTHWLLRFSVLDLTLRGLGVDIQWAWTFLIQMVSLSAGQLSLIPGGAGGTELTSAALLAPMIGKS
TAAAAIVIWRAVTFYFYLVAGGPVFAVLAGRPLLKKLISSREASS*
AnnotationID:2210GeneID:2202
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 09:09:56
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA4313
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0392
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66991.1|AE016327_6 (AE016779) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 330

 Score =  377 bits (968), Expect = e-104
 Identities = 189/320 (59%), Positives = 240/320 (75%), Gaps = 1/320 (0%)








 
Structural Features:
COG0392, Predicted integral membrane protein
CD-Length = 322 residues,  93.2% aligned
Score = 67.4 bits (164), Expect = 2e-12
Identities = 74/300 (24%), Positives = 113/300 (37%), Gaps = 6/300 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4407




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21553




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36680




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2202_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2202
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3749
                           PA4313_tr
                           translation of PA4313
                           333
                           99.69
                           99.69
                           0
                           1653.0
     

     
     
115712
                           gb|AAG07701.1|AE004847_8
                           (AE004847) hypothetical protein PA4313 [Pseudomonas aeruginosa PAO1]
                           333
                           99.69
                           99.69
                           0
                           1653.0
     

     
     
115713
                           gb|AAN66991.1|AE016327_6
                           (AE016779) membrane protein, putative [Pseudomonas putida KT2440]
                           334
                           57.78
                           73.35
                           5
                           967.0
     

     






      

          
GC ORFID: 45204How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4313Glimmer Score: 

          
Start: 4268575Stop: 4269576

          
Length: 1002


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4313 translation of PA4313Homolog Bit Score 641.0

          
Other Homologs:  t_PA4313 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCGAGGCTGGTTACTGCTGTTCGGTTTGATCGGTGCCTCGCTGATTCCGCTGGTGCTCGGCGGCAGC 
GACATGTTCCCGCGCTTGCGCGCCTTCCCGCTGGACAGCCTGCTGCTGATGTTCGGCATGATCGTGGTCTGC 
TGGTTCATCAACGGCCTACGCCTGCGCTTGCTGCTCGCCGGGCGCGCCGGCAAGCTCGGGCAGTTGCAGAGC 
GTCGGCATCATCATGGCCAGCGAATTCGCCTTCTGCGCCACTCCGGGCGGCAGCGGCGGGCCGTTGACCCTG 
ATGGCGTTGCTGGCCCGGCGCGGCCTGCGCCCGGCACAGACCAGCGCGGTGTTCGCGGTCGACCAATTGGCC 
GACCTGACGTTCTTCCTCTGCGCCCTCGGCGCGATCCTGATCTATGCCCTCAGCCATTCGCTGAGCCCGAAC 
ATGGAATCGAGCCTGATCTTCAGCGCGGTATTCCTGGTCGGCCTGTTCGTCGGCGCGGTAATGCTGATCCGC 
TACCTGCACCAGGTGATCCGCTTCAACGGGCGGGTTCTAGCGCGGCTCGGCGTGTCATCGCGCAAGCGCCTG 
CACTGGGGCCGCAAGATCCTGCATTTCCGCATTGCCCTGCACGACAGCCTGCGCCTGCCGAAACGACGCCTG 
CTGGCGGTCTTCCTTCTCAGCAGTACGCACTGGCTGCTGCGCTTCAGCGTGCTCGACCTGACCTTGCGCGGC 
CTGGGAGTGGACATCCAGTGGGCCTGGACCTTCCTGATCCAGATGGTCTCGCTCAGCGCCGGACAGCTCTCG 
CTGATCCCCGGCGGCGCCGGCGGCACCGAGCTGACCTCGGCGGCCCTGCTGGCCCCCATGATCGGCAAGTCG 
ACGGCGGCGGCGGCCATCGTCATCTGGCGAGCGGTGACCTTCTATTTCTACCTCGTCGCCGGCGGCCCGGTG 
TTCGCCGTGCTCGCCGGACGCCCGCTGCTGAAGAAGCTGATCAGCAGTCGCGAGGCTTCTTCCTGA