ViewGene
Locus Name:
GeneID:
Location:

GeneID:2201
TrivialName: PA14_52150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52150
PAO1 Ortholog Locus:PA0936
Sequence Length:939
Protein Length:312
Start: 4624345
Stop: 4625283
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04325.1|AE004528_3 (AE004528) lipopolysaccharide biosynthetic protein LpxO2 [Pseudomonas aeruginosa PAO1]
Identities = 311/312 (99%), Positives = 312/312 (100%)
Sequence:
ATGAGCGTTTCTCTCCTGGTAAAAGTCACTCTGGTGGGCCTGTTCGTCGCCAGCGTCCTGTTCGTCCATTTC
CGTGGGCGCGCGCGCTTGCCCTTCCTGCGTCAACTGGTCAACCACTCCGCCTGGTTCGCCCCCTACAACTCG
CTGATGTACCTGTTCTCCAGCGTCCCCTCGAAGCCCTATCTGGATCGCAGCCGTTTTCCAGAGCTGGACGAA
CTGAAGAACAATTGGCAAACCATCCGCGAAGAAGCCCTCAACCTGTTCGACGAGGGTTATATCCGGGCTGCC
CTGAACAACAACGAAGCCGGCTTCGGCTCGTTCTTCAAGAAAGGCTGGAAGCGCTTCTACCTGACCTGGTAC
GACGGCCCGCTGCCCTCCGCCCAGCAGCTCTGCCCGAAGACCGTAGAGCTGGTGAGCCGCATCCCCAACGTC
AAGGGCGCGATGTTCACCCTGCTTCCCGGCGGCAGCCACCTGAATCCGCACCGCGACCCCTTCGGCGGCTCA
CTGCGCTATCACCTCGGCCTGTCCACGCCGAATTCGGACAACTGCCGCATCTACGTCGACGGCCAGCCCTAC
GCGTGGCGTGATGGCGAAGACGTGATGTTCGACGAAACCTTCGTCCACTGGGTGAAGAACGAGACCGAGCAG
ACCCGGGTGATTCTCTTCTGCGATATCGAGCGGCCGCTCCGTTCCCGCCTGCTGACCCGGCTCAATCGCTGG
ATCAGCGGCATTCTCGGGCGTGCGACCGCACCGCAGAACGTCGAAGGCGAACGCGTCGGCAGCATCAACCAG
GCCTACTCGGTCGCCATTCGCGGCGGCAATGCCATCGGCGCCCAGGTGAAGCGCTTCAAACGCGCCTACCCG
AAGGCCTACCGAGTCCTCCGCCCGGTGCTGGCGGTGATCCTGCTGGTCATCCTCTATCGTTGGATCTTCGGC
TGA
Translation:
MSVSLLVKVTLVGLFVASVLFVHFRGRARLPFLRQLVNHSAWFAPYNSLMYLFSSVPSKPYLDRSRFPELDE
LKNNWQTIREEALNLFDEGYIRAALNNNEAGFGSFFKKGWKRFYLTWYDGPLPSAQQLCPKTVELVSRIPNV
KGAMFTLLPGGSHLNPHRDPFGGSLRYHLGLSTPNSDNCRIYVDGQPYAWRDGEDVMFDETFVHWVKNETEQ
TRVILFCDIERPLRSRLLTRLNRWISGILGRATAPQNVEGERVGSINQAYSVAIRGGNAIGAQVKRFKRAYP
KAYRVLRPVLAVILLVILYRWIFG*
AnnotationID:2209GeneID:2201
AnnotatorUID: danlee
Modification Date/Time: 2004-05-10 15:03:43
Gene Name:lpxO2
Confidence Code:2
GeneProduct:lipopolysaccharide biosynthetic protein LpxO2
Cell Localization:()
Synonyms:PA0936
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3555, pfam05118
Secondary Functional Category(ies):Putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3555, Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases.  Score: 318, 5e-88
pfam05118, Asp_Arg_Hydrox, Aspartyl/Asparaginyl beta-hydroxylase. Score: 214, 1e-56






   
Genomic Context:






   
Comment:


















    ReferenceID:4405




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21551




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2201
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3747
                           PA0936_tr
                           translation of PA0936
                           312
                           99.67
                           99.99
                           0
                           1653.0
     

     
     
115692
                           gb|AAG04325.1|AE004528_3
                           (AE004528) lipopolysaccharide biosynthetic protein LpxO2 [Pseudomonas aeruginosa PAO1]
                           312
                           99.67
                           99.99
                           0
                           1653.0
     

     
     
115693
                           gb|AAN70143.1|AE016653_14
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           312
                           76.60
                           84.93
                           1
                           1286.0
     

     
     
115694
                           gb|AAO57367.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           312
                           73.71
                           85.25
                           0
                           1256.0
     

     
     
115695
                           dbj|BAC51200.1|
                           (AP005956) bll5935 [Bradyrhizobium japonicum USDA 110]
                           322
                           51.55
                           66.45
                           23
                           844.0
     

     






      

          
GC ORFID: 45203How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0936Glimmer Score: 

          
Start: 329562Stop: 328624

          
Length: 939


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0936 translation of PA0936Homolog Bit Score 641.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1748 (ORF: BLASTX 493.0), t_PA4512 (ORF: BLASTX 301.0), t_PA0936 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGTTTCTCTCCTGGTAAAAGTCACTCTGGTGGGCCTGTTCGTCGCCAGCGTCCTGTTCGTCCATTTC 
CGTGGGCGCGCGCGCTTGCCCTTCCTGCGTCAACTGGTCAACCACTCCGCCTGGTTCGCCCCCTACAACTCG 
CTGATGTACCTGTTCTCCAGCGTCCCCTCGAAGCCCTATCTGGATCGCAGCCGTTTTCCAGAGCTGGACGAA 
CTGAAGAACAATTGGCAAACCATCCGCGAAGAAGCCCTCAACCTGTTCGACGAGGGTTATATCCGGGCTGCC 
CTGAACAACAACGAAGCCGGCTTCGGCTCGTTCTTCAAGAAAGGCTGGAAGCGCTTCTACCTGACCTGGTAC 
GACGGCCCGCTGCCCTCCGCCCAGCAGCTCTGCCCGAAGACCGTAGAGCTGGTGAGCCGCATCCCCAACGTC 
AAGGGCGCGATGTTCACCCTGCTTCCCGGCGGCAGCCACCTGAATCCGCACCGCGACCCCTTCGGCGGCTCA 
CTGCGCTATCACCTCGGCCTGTCCACGCCGAATTCGGACAACTGCCGCATCTACGTCGACGGCCAGCCCTAC 
GCGTGGCGTGATGGCGAAGACGTGATGTTCGACGAAACCTTCGTCCACTGGGTGAAGAACGAGACCGAGCAG 
ACCCGGGTGATTCTCTTCTGCGATATCGAGCGGCCGCTCCGTTCCCGCCTGCTGACCCGGCTCAATCGCTGG 
ATCAGCGGCATTCTCGGGCGTGCGACCGCACCGCAGAACGTCGAAGGCGAACGCGTCGGCAGCATCAACCAG 
GCCTACTCGGTCGCCATTCGCGGCGGCAATGCCATCGGCGCCCAGGTGAAGCGCTTCAAACGCGCCTACCCG 
AAGGCCTACCGAGTCCTCCGCCCGGTGCTGGCGGTGATCCTGCTGGTCATCCTCTATCGTTGGATCTTCGGC 
TGA