ViewGene
Locus Name:
GeneID:
Location:

GeneID:2200
TrivialName: PA14_01760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01760
PAO1 Ortholog Locus:PA0143
Sequence Length:990
Protein Length:329
Start: 161387
Stop: 162376
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03533.2|AE004452_5 (AE004452) nonspecific ribonucleoside hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 323/329 (98%), Positives = 326/329 (99%)
Sequence:
ATGCCCGCCAGCCTTCCTCTGTCCGCTGCCGAAACGGCGGCGGCGCAATCGCCGCGGACCCTGATCATCGAC
ACCGACCCGGGCGCCGACGACGTGATCGCCCTGCTGTTCGCCATGGCCTCGCCGAAGGAGCTGAAGATCCAG
GCGCTGACCACCGTCGCCGGCAACGTGCCGCTGGAAAAGACCGCGCGCAACGCCCGGCTGGCCCGCGAGTGG
GGCAAGCGCCCGGATATCCCGGTCTACGCCGGCGCCCCGCGGCCGCTGCTGCGCACGCCGATCTACGCCGCC
GACGTACACGGCAGCGAAGGCATCACCGGCGTCGAGGTGCATGAGCCGAAGCAGCCGCTGGCCGAAGGCAAC
GCGGTGGACTACCTGATCCGTACCCTGCGCGCGGCGCCGGAGAAGAGCGTGACCCTGGCCATGCTCGGCCCG
GAGACCAACCTCGCGCTGGCCCTGACCCAGGCCCCGGACATCGTCAAGGGCATCCGCGAGATCGTGATCATG
GGCGGCGCCCACTTCAACGGTGGCAACATCACCCCGGCCGCCGAATTCAATATCTTCGCCGACCCCCACGCG
GCGGAAATCGTGCTCAAGAGCGGGGCGCCGATCACCATGCTGCCGCTCGACGTGACCCACAAGATCCTCACC
AGCCCCGAGCGCATCGCCAAGCTGCGCAACCTCGGCAACCGAGCCGGCAAGACCGTCGCCGACATCCTCGAC
GCCTACGTCCAGTACGACATCAAGTACTACGGCCTGAAGGGCGGCCCGGTGCACGACGCCACGGTGGTCGCC
TACCTGCTCAAGCCCTCGCTGTTCAAGGGCAAGCGGATCAACGTGCAGGTCGACAGCCGCGAGGGCATCACC
TTCGGCCAGACCGTGGCCGACTGGTACGGCGGCCTCAAGCAGCCGGCCAACGTCGAGTGGATCAACGAGGGC
GATGCCCAGGGGTTCTTCGACCTGCTCACCGAGCGTATCGCCCGCCTGCCCTGA
Translation:
MPASLPLSAAETAAAQSPRTLIIDTDPGADDVIALLFAMASPKELKIQALTTVAGNVPLEKTARNARLAREW
GKRPDIPVYAGAPRPLLRTPIYAADVHGSEGITGVEVHEPKQPLAEGNAVDYLIRTLRAAPEKSVTLAMLGP
ETNLALALTQAPDIVKGIREIVIMGGAHFNGGNITPAAEFNIFADPHAAEIVLKSGAPITMLPLDVTHKILT
SPERIAKLRNLGNRAGKTVADILDAYVQYDIKYYGLKGGPVHDATVVAYLLKPSLFKGKRINVQVDSREGIT
FGQTVADWYGGLKQPANVEWINEGDAQGFFDLLTERIARLP*
AnnotationID:2208GeneID:2200
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 06:06:34
Gene Name:nuh
Confidence Code:1
GeneProduct:nonspecific ribonucleoside hydrolase
Cell Localization:()
Synonyms:iunH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:inosine-uridine preferring nucleoside hydrolase
Functional Category Confidence Code:5
COGs:COG1957,pfam01156
Secondary Functional Category(ies):
EC Number:3.2.2.1
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55884.1| (AE016864) inosine/uridine-preferring nucleoside hydrolase
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 341

 Score =  463 bits (1192), Expect = e-130
 Identities = 225/327 (68%), Positives = 274/327 (83%), Gaps = 2/327 (0%)

>gb|AAN68072.1|AE016439_7 (AE016783) inosine-uridine preferring nucleoside hydrolase
           [Pseudomonas putida KT2440]
          Length = 322

 Score =  461 bits (1187), Expect = e-129
 Identities = 224/322 (69%), Positives = 269/322 (83%), Gaps = 1/322 (0%)








 
Structural Features:
COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase 
[Nucleotide transport and metabolism]
CD-Length = 311 residues, 100.0% aligned
Score =  378 bits (972), Expect = 5e-106
Identities = 169/313 (53%), Positives = 210/313 (67%), Gaps = 2/313 (0%)

pfam01156, IU_nuc_hydro, Inosine-uridine preferring nucleoside hydrolase.
CD-Length = 309 residues,  99.7% aligned
Score =  280 bits (718), Expect = 1e-76
Identities = 131/312 (41%), Positives = 188/312 (60%), Gaps = 6/312 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4403




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21549




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33520




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2200_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2200
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3746
                           PA0143_tr
                           translation of PA0143
                           329
                           98.17
                           99.08
                           0
                           1656.0
     

     
     
115652
                           gb|AAG03533.2|AE004452_5
                           (AE004452) nonspecific ribonucleoside hydrolase [Pseudomonas aeruginosa PAO1]
                           350
                           92.28
                           93.14
                           21
                           1656.0
     

     
     
115654
                           gb|AAN68072.1|AE016439_7
                           (AE016783) inosine-uridine preferring nucleoside hydrolase [Pseudomonas putida KT2440]
                           329
                           68.08
                           81.76
                           7
                           1188.0
     

     
     
115653
                           gb|AAO55884.1|
                           (AE016864) inosine/uridine-preferring nucleoside hydrolase [Pseudomonas syringae pv. tomato str. DC3000]
                           341
                           65.98
                           80.64
                           12
                           1192.0
     

     
     
115658
                           dbj|BAB50136.1|
                           (AP003001) nucleoside hydrolase [Mesorhizobium loti]
                           329
                           48.63
                           62.91
                           16
                           805.0
     

     






      

          
GC ORFID: 45202How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0143Glimmer Score: 

          
Start: 5962726Stop: 5963715

          
Length: 990


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0143 translation of PA0143Homolog Bit Score 642.0

          
Other Homologs:  t_PA0143 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGCCAGCCTTCCTCTGTCCGCTGCCGAAACGGCGGCGGCGCAATCGCCGCGGACCCTGATCATCGAC 
ACCGACCCGGGCGCCGACGACGTGATCGCCCTGCTGTTCGCCATGGCCTCGCCGAAGGAGCTGAAGATCCAG 
GCGCTGACCACCGTCGCCGGCAACGTGCCGCTGGAAAAGACCGCGCGCAACGCCCGGCTGGCCCGCGAGTGG 
GGCAAGCGCCCGGATATCCCGGTCTACGCCGGCGCCCCGCGGCCGCTGCTGCGCACGCCGATCTACGCCGCC 
GACGTACACGGCAGCGAAGGCATCACCGGCGTCGAGGTGCATGAGCCGAAGCAGCCGCTGGCCGAAGGCAAC 
GCGGTGGACTACCTGATCCGTACCCTGCGCGCGGCGCCGGAGAAGAGCGTGACCCTGGCCATGCTCGGCCCG 
GAGACCAACCTCGCGCTGGCCCTGACCCAGGCCCCGGACATCGTCAAGGGCATCCGCGAGATCGTGATCATG 
GGCGGCGCCCACTTCAACGGTGGCAACATCACCCCGGCCGCCGAATTCAATATCTTCGCCGACCCCCACGCG 
GCGGAAATCGTGCTCAAGAGCGGGGCGCCGATCACCATGCTGCCGCTCGACGTGACCCACAAGATCCTCACC 
AGCCCCGAGCGCATCGCCAAGCTGCGCAACCTCGGCAACCGAGCCGGCAAGACCGTCGCCGACATCCTCGAC 
GCCTACGTCCAGTACGACATCAAGTACTACGGCCTGAAGGGCGGCCCGGTGCACGACGCCACGGTGGTCGCC 
TACCTGCTCAAGCCCTCGCTGTTCAAGGGCAAGCGGATCAACGTGCAGGTCGACAGCCGCGAGGGCATCACC 
TTCGGCCAGACCGTGGCCGACTGGTACGGCGGCCTCAAGCAGCCGGCCAACGTCGAGTGGATCAACGAGGGC 
GATGCCCAGGGGTTCTTCGACCTGCTCACCGAGCGTATCGCCCGCCTGCCCTGA