ViewGene
Locus Name:
GeneID:
Location:

GeneID:2199
TrivialName: PA14_63710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63710
PAO1 Ortholog Locus:PA4819
Sequence Length:975
Protein Length:324
Start: 5680920
Stop: 5679946
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08204.1|AE004895_4 (AE004895) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 323/324 (99%), Positives = 323/324 (99%)
Sequence:
ATGATGATCGAACCTTCCCTGGCGTCGAAGCTCGAGGCCCCCTGCCTGCTCAGCGTGGTAGTGCCGGTGTTC
AACGAGGAGGCGGTGCTGCCAGCCTTCCACCAGCGCCTCGGCGCCGTGCTCGGCGACCTTGGCGACGATTGC
GAGGTGCTCTATGTCGACGACGGCAGCACCGACCGCAGCGCGACGATCCTCGCCCAGCTACAGGCCGCCGAC
CGCCGGGTGGGCGTGGCCCGCTTCACCCGCAACTTCGGCAAGGAACAGGCGATGAGCGCCGGGCTCAAGCTG
TCGCGCGGCGCCGCGGTGATCGTCATCGATGCCGACCTGCAGGATCCCCCGGAACTGATCCCGCAGATGCTC
GACGCCTGGATCGGCGGCGCCGAAATGGTCAACATGCGCCGCCGTAGCCGGGCCGGTGAAAGCTGGCTGAAG
CGCGCCTCGGCGAGCGCCTTCTACCGGCTGATCAACCGCCTCAGCGAGGTGCCGATCCCGCGCGACGTCGGC
GATTTCCGCCTGCTCGACCGGCGGGTGGTCGATGCCCTTTGCGAGCTGCCGGAAGGCAATCGCTTCATGAAG
GGACTGTTCGCCTGGGTCGGTTTCCGCCAGGTCGATATCGCCTATAGCCGCGCCGCCCGCGTCGCCGGCCAC
AGCAAGTGGCGCTACTGGCGGCTGTGGAACTTCGCCCTGGAAGGCATCACCGGGTTTTCCACCGCGCCGCTG
AAGGTCGCCGGCTACCTCGGCCTGCTCAGCCTGCTGGCGGCCCTGGCGACCCTGCTCGCCGGGATCTTCGGC
CAGCAGGAGATCCACGAACACTGGCCGGTGATCGCCGCGCTGTTCCTGATCGGCGGCCTGCAACTGCTGGCC
ATCGGCGTGTGTAGCGAATACCTCGGGCGGATGACCATGGAAGCGCGGCGCCGCCCGCTCTACCTGATCGAC
CGCTACCTGCCGGCGCAGGTCGGCGGGGCCAATCCGTGA
Translation:
MMIEPSLASKLEAPCLLSVVVPVFNEEAVLPAFHQRLGAVLGDLGDDCEVLYVDDGSTDRSATILAQLQAAD
RRVGVARFTRNFGKEQAMSAGLKLSRGAAVIVIDADLQDPPELIPQMLDAWIGGAEMVNMRRRSRAGESWLK
RASASAFYRLINRLSEVPIPRDVGDFRLLDRRVVDALCELPEGNRFMKGLFAWVGFRQVDIAYSRAARVAGH
SKWRYWRLWNFALEGITGFSTAPLKVAGYLGLLSLLAALATLLAGIFGQQEIHEHWPVIAALFLIGGLQLLA
IGVCSEYLGRMTMEARRRPLYLIDRYLPAQVGGANP*
AnnotationID:2207GeneID:2199
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 06:06:08
Gene Name:
Confidence Code:3
GeneProduct:putative glycosyl transferase
Cell Localization:()
Synonyms:gtrB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0463,pfam00535
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM37891.1| (AE011946) glucosyl transferase [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 340

 Score =  300 bits (767), Expect = 1e-80
 Identities = 161/305 (52%), Positives = 204/305 (66%), Gaps = 9/305 (2%)

>gb|AAM42135.1| (AE012399) glucosyl transferase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 347

 Score =  297 bits (761), Expect = 5e-80
 Identities = 161/305 (52%), Positives = 202/305 (66%), Gaps = 9/305 (2%)

>gb|AAO28038.1| (AE012553) glycosyl transferase [Xylella fastidiosa Temecula1]
          Length = 337

 Score =  285 bits (729), Expect = 3e-76
 Identities = 154/303 (50%), Positives = 201/303 (66%), Gaps = 9/303 (2%)






 
Structural Features:
COG0463, WcaA, Glycosyltransferases involved in cell wall biogenesis 
[Cell envelope biogenesis, outer membrane]
CD-Length = 291 residues,  95.9% aligned
Score =  106 bits (264), Expect = 3e-24
Identities = 89/286 (31%), Positives = 127/286 (44%), Gaps = 12/286 (4%)

pfam00535, Glycos_transf_2, Glycosyl transferase.
CD-Length = 168 residues, 100.0% aligned
Score = 95.3 bits (236), Expect = 8e-21
Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 9/171 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4401




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21547




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35229




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2199_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2199
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3745
                           PA4819_tr
                           translation of PA4819
                           324
                           99.69
                           99.69
                           0
                           1655.0
     

     
     
115608
                           gb|AAG08204.1|AE004895_4
                           (AE004895) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
                           324
                           99.69
                           99.69
                           0
                           1655.0
     

     
     
115610
                           gb|AAM42135.1|
                           (AE012399) glucosyl transferase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           354
                           47.45
                           59.32
                           37
                           765.0
     

     
     
115609
                           gb|AAM37891.1|
                           (AE011946) glucosyl transferase [Xanthomonas axonopodis pv. citri str. 306]
                           355
                           46.76
                           60.00
                           46
                           769.0
     

     
     
115611
                           gb|AAO28038.1|
                           (AE012553) glycosyl transferase [Xylella fastidiosa Temecula1]
                           352
                           44.60
                           58.80
                           43
                           737.0
     

     






      

          
GC ORFID: 45201How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4819Glimmer Score: 

          
Start: 4944600Stop: 4943626

          
Length: 975


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4819 translation of PA4819Homolog Bit Score 642.0

          
Other Homologs:  t_PA4819 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGATCGAACCTTCCCTGGCGTCGAAGCTCGAGGCCCCCTGCCTGCTCAGCGTGGTAGTGCCGGTGTTC 
AACGAGGAGGCGGTGCTGCCAGCCTTCCACCAGCGCCTCGGCGCCGTGCTCGGCGACCTTGGCGACGATTGC 
GAGGTGCTCTATGTCGACGACGGCAGCACCGACCGCAGCGCGACGATCCTCGCCCAGCTACAGGCCGCCGAC 
CGCCGGGTGGGCGTGGCCCGCTTCACCCGCAACTTCGGCAAGGAACAGGCGATGAGCGCCGGGCTCAAGCTG 
TCGCGCGGCGCCGCGGTGATCGTCATCGATGCCGACCTGCAGGATCCCCCGGAACTGATCCCGCAGATGCTC 
GACGCCTGGATCGGCGGCGCCGAAATGGTCAACATGCGCCGCCGTAGCCGGGCCGGTGAAAGCTGGCTGAAG 
CGCGCCTCGGCGAGCGCCTTCTACCGGCTGATCAACCGCCTCAGCGAGGTGCCGATCCCGCGCGACGTCGGC 
GATTTCCGCCTGCTCGACCGGCGGGTGGTCGATGCCCTTTGCGAGCTGCCGGAAGGCAATCGCTTCATGAAG 
GGACTGTTCGCCTGGGTCGGTTTCCGCCAGGTCGATATCGCCTATAGCCGCGCCGCCCGCGTCGCCGGCCAC 
AGCAAGTGGCGCTACTGGCGGCTGTGGAACTTCGCCCTGGAAGGCATCACCGGGTTTTCCACCGCGCCGCTG 
AAGGTCGCCGGCTACCTCGGCCTGCTCAGCCTGCTGGCGGCCCTGGCGACCCTGCTCGCCGGGATCTTCGGC 
CAGCAGGAGATCCACGAACACTGGCCGGTGATCGCCGCGCTGTTCCTGATCGGCGGCCTGCAACTGCTGGCC 
ATCGGCGTGTGTAGCGAATACCTCGGGCGGATGACCATGGAAGCGCGGCGCCGCCCGCTCTACCTGATCGAC 
CGCTACCTGCCGGCGCAGGTCGGCGGGGCCAATCCGTGA