ViewGene
Locus Name:
GeneID:
Location:

GeneID:2198
TrivialName: PA14_10140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10140
PAO1 Ortholog Locus:PA4161
Sequence Length:1032
Protein Length:343
Start: 871468
Stop: 870437
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07548.1|AE004832_8 (AE004832) ferric enterobactin transport protein FepG [Pseudomonas aeruginosa PAO1]
Identities = 341/343 (99%), Positives = 342/343 (99%)
Sequence:
GTGAACGGTCTCCACGCCCTGCGCCTGGGTTCCCTGTCGCTGCGTTGGCGGCCACGGGCGGCGCTGGCCTGC
CTGGTCCTCGCGGGGGTCGGGCTGGCGCTGGCGGCGGCGCTGCTGGGGACCGGCAGCCTGGCGCTGGGCCCG
GCAGAGGTGTTCGCCAGCCTACTCGGCCAGGGCCAGGACCCCACCGCCCAGCGCATCGTCCAGCGCGTGCGC
CTGCCACGGGTGCTCACCGCCTGCCTGGTCGGCGCCGCGCTGGGCATGGCCGGGGCGATCTTCCAGTCGATC
TCGCGCAATCCGCTGGGCTCGCCCGACGTCATCGGTTTCACCACCGGCGCCGCCAGCGGCGCCATCGTGCAG
ATCATCCTGTTCGATGCCGGCCCGCTGGCCACCTCGCTGGCGGCGCTGGCCGCCGGCCTCTGCACGGCGCTG
GCGGTGGTGCTGCTGGCGCGCCGGGGCGCCACCGCCGGCGGCTACCGCCTGGTGCTGGTGGGCATCGGTGTC
GGCGCCAGCCTGTCGGGCCTGAACAGCCTGCTGCTGGTCACCGGCAACCTCGACCAGGCGATGTACGCCCAG
CTCTGGCTGGCCGGCTCGCTGAACACCCGGACCTGGTCGCACGTCGTCCCGGCAGCGCTGGGCCTGCTCGCC
AGCGTGCCGCTGGCGCTGTACCACGGTCGACGCCTGGAGGTGCTGGAGCTGGGCGATGCCAGCGCCGCCCAG
CTCGGCGTGGCGGTGGAGCGCGTGCGCTTGCAGATGGTCCTGGTCGCCGTCGGCATGACCGCCATCGCCACC
GCCGCGGCCGGCCCCATCGCCTTCATCGCCCTGGCCGGCCCGCAACTGGCCCGGCGCCTGACCCGCTCGGCC
GGGGTGCCGTTGCTGTCCGGCGCATTGATGGGCGCGGTCCTGCTGCTGGCCGCCGACCTGCTCGGCCAGCGC
CTGGCATACGTCGCCAACCTGCCGATCGGCCTGATGACCGGCCTGCTCGGCGGTTTCTACCTGCTCTGGCTA
CTGCTGCGCAGCCGCCGGATCTGA
Translation:
MNGLHALRLGSLSLRWRPRAALACLVLAGVGLALAAALLGTGSLALGPAEVFASLLGQGQDPTAQRIVQRVR
LPRVLTACLVGAALGMAGAIFQSISRNPLGSPDVIGFTTGAASGAIVQIILFDAGPLATSLAALAAGLCTAL
AVVLLARRGATAGGYRLVLVGIGVGASLSGLNSLLLVTGNLDQAMYAQLWLAGSLNTRTWSHVVPAALGLLA
SVPLALYHGRRLEVLELGDASAAQLGVAVERVRLQMVLVAVGMTAIATAAAGPIAFIALAGPQLARRLTRSA
GVPLLSGALMGAVLLLAADLLGQRLAYVANLPIGLMTGLLGGFYLLWLLLRSRRI*
AnnotationID:2206GeneID:2198
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 06:06:32
Gene Name:fepG
Confidence Code:2
GeneProduct:ferric enterobactin transport protein FepG
Cell Localization:()
Synonyms:phuD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative cytoplasmic permease PhuD
Functional Category Confidence Code:5
COGs:COG4779,pfam01032,COG0609
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK95842.1| (AY042783) putative cytoplasmic permease PhuD [Photorhabdus
           luminescens]
          Length = 322

 Score =  337 bits (864), Expect = 6e-92
 Identities = 178/322 (55%), Positives = 229/322 (71%), Gaps = 2/322 (0%)

>gb|AAF93943.1| (AE004163) ferric vibriobactin ABC transporter, permease protein
           [Vibrio cholerae]
          Length = 358

 Score =  330 bits (846), Expect = 8e-90
 Identities = 180/334 (53%), Positives = 232/334 (69%)

>emb|CAB52850.1| (AL939110) putative iron-siderophore uptake system transmembrane
           component [Streptomyces coelicolor A3(2)]
          Length = 375

 Score =  294 bits (752), Expect = 6e-79
 Identities = 165/334 (49%), Positives = 217/334 (64%), Gaps = 4/334 (1%)






 
Structural Features:
COG4779, FepG, ABC-type enterobactin transport system, permease component 
[Inorganic ion transport and metabolism]
CD-Length = 346 residues,  98.8% aligned
Score =  339 bits (872), Expect = 2e-94
Identities = 203/343 (59%), Positives = 250/343 (72%), Gaps = 1/343 (0%)

pfam01032, FecCD, FecCD transport family.
CD-Length = 301 residues, 100.0% aligned
Score =  196 bits (499), Expect = 4e-51
Identities = 133/302 (44%), Positives = 175/302 (57%), Gaps = 5/302 (1%)

COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component 
[Inorganic ion transport and metabolism]
CD-Length = 334 residues,  98.5% aligned
Score =  159 bits (404), Expect = 4e-40
Identities = 130/328 (39%), Positives = 185/328 (56%), Gaps = 10/328 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14535




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21545




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36893




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2198_cdd.html


    		




 
URL:

















    ReferenceID:37001




  
Author/Investigator(s):
        Shea CM, McIntosh MA.





  
Title:
        Nucleotide sequence and genetic organization of the ferric enterobactin transport system: homology to other periplasmic binding protein-dependent systems in Escherichia coli.




  
PubMed:
        1838574


MedLine:
        




    
Source:
Mol Microbiol. 1991 Jun;5(6):1415-28.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1838574

















    ReferenceID:37002




  
Author/Investigator(s):
        Chenault SS, Earhart CF.





  
Title:
        Organization of genes encoding membrane proteins of the Escherichia coli ferrienterobactin permease.




  
PubMed:
        1787794


MedLine:
        




    
Source:
Mol Microbiol. 1991 Jun;5(6):1405-13.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1787794









           
Homologs By Global Alignment 

           

       



     
Gene ID:2198
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3744
                           PA4161_tr
                           translation of PA4161
                           343
                           99.41
                           99.70
                           0
                           1655.0
     

     
     
115578
                           gb|AAG07548.1|AE004832_8
                           (AE004832) ferric enterobactin transport protein FepG [Pseudomonas aeruginosa PAO1]
                           343
                           99.12
                           99.70
                           0
                           1652.0
     

     
     
115579
                           gb|AAK95842.1|
                           (AY042783) putative cytoplasmic permease PhuD [Photorhabdus luminescens]
                           343
                           51.89
                           66.76
                           21
                           865.0
     

     
     
115580
                           gb|AAF93943.1|
                           (AE004163) ferric vibriobactin ABC transporter, permease protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           358
                           50.27
                           64.80
                           15
                           836.0
     

     
     
115581
                           gb|AAD48882.1|
                           (U52150) cytoplasmic membrane permease [Vibrio cholerae]
                           358
                           50.27
                           64.80
                           15
                           836.0
     

     






      

          
GC ORFID: 45200How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4161Glimmer Score: 

          
Start: 4082469Stop: 4083500

          
Length: 1032


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4161 translation of PA4161Homolog Bit Score 642.0

          
Other Homologs:  t_PA4161 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACGGTCTCCACGCCCTGCGCCTGGGTTCCCTGTCGCTGCGTTGGCGGCCACGGGCGGCGCTGGCCTGC 
CTGGTCCTCGCGGGGGTCGGGCTGGCGCTGGCGGCGGCGCTGCTGGGGACCGGCAGCCTGGCGCTGGGCCCG 
GCAGAGGTGTTCGCCAGCCTACTCGGCCAGGGCCAGGACCCCACCGCCCAGCGCATCGTCCAGCGCGTGCGC 
CTGCCACGGGTGCTCACCGCCTGCCTGGTCGGCGCCGCGCTGGGCATGGCCGGGGCGATCTTCCAGTCGATC 
TCGCGCAATCCGCTGGGCTCGCCCGACGTCATCGGTTTCACCACCGGCGCCGCCAGCGGCGCCATCGTGCAG 
ATCATCCTGTTCGATGCCGGCCCGCTGGCCACCTCGCTGGCGGCGCTGGCCGCCGGCCTCTGCACGGCGCTG 
GCGGTGGTGCTGCTGGCGCGCCGGGGCGCCACCGCCGGCGGCTACCGCCTGGTGCTGGTGGGCATCGGTGTC 
GGCGCCAGCCTGTCGGGCCTGAACAGCCTGCTGCTGGTCACCGGCAACCTCGACCAGGCGATGTACGCCCAG 
CTCTGGCTGGCCGGCTCGCTGAACACCCGGACCTGGTCGCACGTCGTCCCGGCAGCGCTGGGCCTGCTCGCC 
AGCGTGCCGCTGGCGCTGTACCACGGTCGACGCCTGGAGGTGCTGGAGCTGGGCGATGCCAGCGCCGCCCAG 
CTCGGCGTGGCGGTGGAGCGCGTGCGCTTGCAGATGGTCCTGGTCGCCGTCGGCATGACCGCCATCGCCACC 
GCCGCGGCCGGCCCCATCGCCTTCATCGCCCTGGCCGGCCCGCAACTGGCCCGGCGCCTGACCCGCTCGGCC 
GGGGTGCCGTTGCTGTCCGGCGCATTGATGGGCGCGGTCCTGCTGCTGGCCGCCGACCTGCTCGGCCAGCGC 
CTGGCATACGTCGCCAACCTGCCGATCGGCCTGATGACCGGCCTGCTCGGCGGTTTCTACCTGCTCTGGCTA 
CTGCTGCGCAGCCGCCGGATCTGA