ViewGene
Locus Name:
GeneID:
Location:

GeneID:2194
TrivialName: PA14_26390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26390
PAO1 Ortholog Locus:PA2913
Sequence Length:972
Protein Length:323
Start: 2300531
Stop: 2299560
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06301.1|AE004717_7 (AE004717) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 322/323 (99%), Positives = 323/323 (100%)
Sequence:
ATGAAGCACCCGATCCTGCACCACCTGCTGCTCGGCGCCCTGATCGCCTGCGCCGATGCCGCGCTGGCCGAG
CGCTACCCGCTCAGCGTGCGCAGTTGCGAGCGCGAAGTGACGTTCGAGCGCGCACCGTCGCGCGCGGTCAGC
CACGACATCAACCTCACCGAGATGATGGTCGCCCTCGGTCTGCAGACGCGCATGGTCGGCTATACCGGCATC
AGCGGCTGGTGGAAGAATGCCGATCCCGGATTGATCGCCGCGCTCAAGCCGCTGCCCGAGCTGGTGGCGCGC
TACCCCACGGCGGAAACCCTGCTCGATGTCGACGCCGACTTCTTCTTCGCCGGTTGGGGCTACGGCATGCGC
GTCGGCGGCGACCTCACTCCGGCCAGCCTGGAGCCGCTGGGGGTGAAGGTCTACGAGCTGAGCGAATCCTGC
GCGCAGATCGGCGAGCCGCGCCGCGCCAGCCTCGACGAGCTGTACCGCGACCTGCGCAACCTGGGACGGATC
TTCGACGTCGAACCGCGCGCCGAGCGCCTGGTCGCCAGCCTCCAGGCACGCATCGAGCGCGCCCGCGCCGGC
ATCCCAGCGAACGCCGAGGCGCCGCGGGTGTTCCTCTACGACAGCGGCGAGGACCGCCCCTTCACCTCTGGC
CGCCTGGGCATGCCGCAGGCGCTGATCGAGGCCGCCGGCGGCCGCAGCGTGACCGACGACGTGGCGGCCAGT
TGGACCCAGGTCAACTGGGAAAGCGTGGTCGCCCGCGATCCGCAGGTCATCGTCATCGTCGACTACGGCGAG
ACCAGCGCCGCGCAGAAGCAGCGTTTCCTCGAAGAGAACCCGGCGCTGCGCAGCCTGACCGCGATCCGCGAG
CGACGCTTCATCGTCCTGCCCTATAACCAGGCCACGCCAGGCATCGGCAACGCCGCGGCGATAGAAACCCTG
GTCGCCGGCCTCCACCCTCGGGCGCCACGTCCATGA
Translation:
MKHPILHHLLLGALIACADAALAERYPLSVRSCEREVTFERAPSRAVSHDINLTEMMVALGLQTRMVGYTGI
SGWWKNADPGLIAALKPLPELVARYPTAETLLDVDADFFFAGWGYGMRVGGDLTPASLEPLGVKVYELSESC
AQIGEPRRASLDELYRDLRNLGRIFDVEPRAERLVASLQARIERARAGIPANAEAPRVFLYDSGEDRPFTSG
RLGMPQALIEAAGGRSVTDDVAASWTQVNWESVVARDPQVIVIVDYGETSAAQKQRFLEENPALRSLTAIRE
RRFIVLPYNQATPGIGNAAAIETLVAGLHPRAPRP*
AnnotationID:2202GeneID:2194
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 07:07:21
Gene Name:
Confidence Code:3
GeneProduct:putative iron transport system substrate-binding protein
Cell Localization:()
Synonyms:PA2913
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01148
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58981.1| (AE016876) iron compound ABC transporter, iron compound-binding
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 316

 Score =  373 bits (958), Expect = e-103
 Identities = 188/304 (61%), Positives = 234/304 (76%), Gaps = 3/304 (0%)

>dbj|BAB53828.1| (AP003013) iron (III) ABC transporter, periplasmic-binding protein
           [Mesorhizobium loti]
          Length = 315

 Score =  258 bits (660), Expect = 3e-68
 Identities = 131/303 (43%), Positives = 193/303 (63%), Gaps = 4/303 (1%)






 
Structural Features:
cd01148, TroA_a, Metal binding protein TroA_a.
CD-Length = 284 residues,  99.6% aligned
Score =  298 bits (763), Expect = 6e-82






   
Genomic Context:






   
Comment:


















    ReferenceID:4391




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21537




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36144




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2194_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2194
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3740
                           PA2913_tr
                           translation of PA2913
                           323
                           99.69
                           99.99
                           0
                           1655.0
     

     
     
115435
                           gb|AAG06301.1|AE004717_7
                           (AE004717) hypothetical protein PA2913 [Pseudomonas aeruginosa PAO1]
                           323
                           99.69
                           99.99
                           0
                           1655.0
     

     
     
115436
                           gb|AAQ59235.2|
                           (AE016915) probable iron transport system substrate-binding protein [Chromobacterium violaceum ATCC 12472]
                           329
                           60.48
                           73.55
                           15
                           993.0
     

     
     
115437
                           gb|AAO58981.1|
                           (AE016876) iron compound ABC transporter, iron compound-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           323
                           59.13
                           73.99
                           7
                           959.0
     

     
     
115439
                           gb|AAR07732.1|
                           (AY378100) iron (III) ABC transporter periplasmic binding [Klebsiella pneumoniae]
                           327
                           41.89
                           59.02
                           12
                           663.0
     

     






      

          
GC ORFID: 45196How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2913Glimmer Score: 

          
Start: 2653394Stop: 2654365

          
Length: 972


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2913 translation of PA2913Homolog Bit Score 642.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2946 (ORF: BLASTX 374.0), t_PA2913 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCACCCGATCCTGCACCACCTGCTGCTCGGCGCCCTGATCGCCTGCGCCGATGCCGCGCTGGCCGAG 
CGCTACCCGCTCAGCGTGCGCAGTTGCGAGCGCGAAGTGACGTTCGAGCGCGCACCGTCGCGCGCGGTCAGC 
CACGACATCAACCTCACCGAGATGATGGTCGCCCTCGGTCTGCAGACGCGCATGGTCGGCTATACCGGCATC 
AGCGGCTGGTGGAAGAATGCCGATCCCGGATTGATCGCCGCGCTCAAGCCGCTGCCCGAGCTGGTGGCGCGC 
TACCCCACGGCGGAAACCCTGCTCGATGTCGACGCCGACTTCTTCTTCGCCGGTTGGGGCTACGGCATGCGC 
GTCGGCGGCGACCTCACTCCGGCCAGCCTGGAGCCGCTGGGGGTGAAGGTCTACGAGCTGAGCGAATCCTGC 
GCGCAGATCGGCGAGCCGCGCCGCGCCAGCCTCGACGAGCTGTACCGCGACCTGCGCAACCTGGGACGGATC 
TTCGACGTCGAACCGCGCGCCGAGCGCCTGGTCGCCAGCCTCCAGGCACGCATCGAGCGCGCCCGCGCCGGC 
ATCCCAGCGAACGCCGAGGCGCCGCGGGTGTTCCTCTACGACAGCGGCGAGGACCGCCCCTTCACCTCTGGC 
CGCCTGGGCATGCCGCAGGCGCTGATCGAGGCCGCCGGCGGCCGCAGCGTGACCGACGACGTGGCGGCCAGT 
TGGACCCAGGTCAACTGGGAAAGCGTGGTCGCCCGCGATCCGCAGGTCATCGTCATCGTCGACTACGGCGAG 
ACCAGCGCCGCGCAGAAGCAGCGTTTCCTCGAAGAGAACCCGGCGCTGCGCAGCCTGACCGCGATCCGCGAG 
CGACGCTTCATCGTCCTGCCCTATAACCAGGCCACGCCAGGCATCGGCAACGCCGCGGCGATAGAAACCCTG 
GTCGCCGGCCTCCACCCTCGGGCGCCACGTCCATGA