ViewGene

Locus Name:
GeneID:
Location:

GeneID:2193
TrivialName: PA14_32720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32720
PAO1 Ortholog Locus:PA2467
Sequence Length:987
Protein Length:328
Start: 2841016
Stop: 2842002
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05855.1|AE004674_5 (AE004674) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
Identities = 326/328 (99%), Positives = 326/328 (99%)
Sequence:
GTGGACGGGACGCGCGGTAGGGTCGACGAAGCGGTGGTCAGGCAGGCCATCCACTGGCTGGTCCGCCTGCGC
TCGCAGCCGGCCGACGATCGCCTGCAGCGCGCCTGCGCGGCCTGGCGCGCGGAGCACGGCGAGCACGAGCGG
GCCTGGCAGCAGGTCAGCGCGCTCAACGAAGAACTGCACGGACGCTTCAAGGCGCTGCCCGGCGGGGTCGCC
TACGGCACCCTGGACAGCAGCGCGCAGCGCCTGCAGCGGCGCCAGGCGCTGAAACTGCTGTCGCTGCTGGTG
GCTGGCGGCGCCGTGGCCTGGGTCGGTCGCGACAGCCTGCCCTGGCAGCGCCTGAGCGCCGACTACAGCACC
GCCACCGGCGAGCGACGCAGTATCGAGCTGGTCGACGGCACCCGCCTGCAACTGAACACCGACAGCGCGGTC
GACGTGCGCTACGACGCCGGCCAGCGCCTGATCCTCCTCGCCCGCGGCGAGATCTTCCTCGCCAGCGGCGCC
GATACGCAATCGCCCACGCACAGGCCGCTGCGGGTACGTACCGCGCAAGGGCTGTTCGAGGCCCTCGGCACC
CGTTTCAACGTACGCCTGCAAGATGCCGCCACCTGTCTCAGCGTCAGCGAGGGTTCGGTGCGCATCGATGCC
TTCGGCGCGCGTCCGCTGCAGGCTCCGGTGGCCGAGGCGGGGCAGAGCTATCGGATCGCCGCCGACGGCGTG
CGGCGCCTCGAACGGCCGCAGATGGACGCCGTGGCCTGGGCCGATGGCCTGATCGTCACCCGCGACATGCGC
CTGGCCGACTTCCTCGCCGAGGTCGGCCGCTACCGCAACGGCTACCTCGGCTGCGCCGCGGAGGTCGCCGAC
CTGCGTCTGTCCGGGGTCTACCGCCTGGACGACACCGACAAGCTGTTGCAGGTGCTCGCGCGGACCCTGCCG
GTGCGCCTGCAGCGGCATACCCGCTGGTGGGTGAGGGTGGTCGCCGCCTGA
Translation:
MDGTRGRVDEAVVRQAIHWLVRLRSQPADDRLQRACAAWRAEHGEHERAWQQVSALNEELHGRFKALPGGVA
YGTLDSSAQRLQRRQALKLLSLLVAGGAVAWVGRDSLPWQRLSADYSTATGERRSIELVDGTRLQLNTDSAV
DVRYDAGQRLILLARGEIFLASGADTQSPTHRPLRVRTAQGLFEALGTRFNVRLQDAATCLSVSEGSVRIDA
FGARPLQAPVAEAGQSYRIAADGVRRLERPQMDAVAWADGLIVTRDMRLADFLAEVGRYRNGYLGCAAEVAD
LRLSGVYRLDDTDKLLQVLARTLPVRLQRHTRWWVRVVAA*
AnnotationID:2201GeneID:2193
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 17:05:29
Gene Name:
Confidence Code:3
GeneProduct:probable transmembrane sensor
Cell Localization:()
Synonyms:PA2467
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3712/pfam04773: FecR, Fe2+-dicitrate sensor, membrane component
[Inorganic ion transport and metabolism / Signal transduction mechanisms].
Genomic Context:
Comment:
ReferenceID:14531
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21535
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2193

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3738 PA2467_tr translation of PA2467 328 99.39 99.39 0 1656.0
115425 gb|AAG05855.1|AE004674_5 (AE004674) probable transmembrane sensor [Pseudomonas aeruginosa PAO1] 328 99.08 99.39 0 1653.0
115426 gb|AAN65794.1|AE016207_1 (AE016774) transmembrane sensor, putative [Pseudomonas putida KT2440] 331 48.64 65.55 16 736.0
3739 PA3900_tr translation of PA3900 333 41.44 59.15 21 599.0
115427 gb|AAG07287.1|AE004807_6 (AE004807) probable transmembrane sensor [Pseudomonas aeruginosa PAO1] 333 41.44 59.15 21 599.0
GC ORFID: 45195How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2467Glimmer Score:
Start: 2112908Stop: 2111922
Length: 987
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2467 translation of PA2467Homolog Bit Score 642.0
Other Homologs: t_PA3900 (ORF: BLASTX 234.0), t_PA2467 (ORF: GLIMMER)
GC ORF Sequence
GTGGACGGGACGCGCGGTAGGGTCGACGAAGCGGTGGTCAGGCAGGCCATCCACTGGCTGGTCCGCCTGCGC
TCGCAGCCGGCCGACGATCGCCTGCAGCGCGCCTGCGCGGCCTGGCGCGCGGAGCACGGCGAGCACGAGCGG
GCCTGGCAGCAGGTCAGCGCGCTCAACGAAGAACTGCACGGACGCTTCAAGGCGCTGCCCGGCGGGGTCGCC
TACGGCACCCTGGACAGCAGCGCGCAGCGCCTGCAGCGGCGCCAGGCGCTGAAACTGCTGTCGCTGCTGGTG
GCTGGCGGCGCCGTGGCCTGGGTCGGTCGCGACAGCCTGCCCTGGCAGCGCCTGAGCGCCGACTACAGCACC
GCCACCGGCGAGCGACGCAGTATCGAGCTGGTCGACGGCACCCGCCTGCAACTGAACACCGACAGCGCGGTC
GACGTGCGCTACGACGCCGGCCAGCGCCTGATCCTCCTCGCCCGCGGCGAGATCTTCCTCGCCAGCGGCGCC
GATACGCAATCGCCCACGCACAGGCCGCTGCGGGTACGTACCGCGCAAGGGCTGTTCGAGGCCCTCGGCACC
CGTTTCAACGTACGCCTGCAAGATGCCGCCACCTGTCTCAGCGTCAGCGAGGGTTCGGTGCGCATCGATGCC
TTCGGCGCGCGTCCGCTGCAGGCTCCGGTGGCCGAGGCGGGGCAGAGCTATCGGATCGCCGCCGACGGCGTG
CGGCGCCTCGAACGGCCGCAGATGGACGCCGTGGCCTGGGCCGATGGCCTGATCGTCACCCGCGACATGCGC
CTGGCCGACTTCCTCGCCGAGGTCGGCCGCTACCGCAACGGCTACCTCGGCTGCGCCGCGGAGGTCGCCGAC
CTGCGTCTGTCCGGGGTCTACCGCCTGGACGACACCGACAAGCTGTTGCAGGTGCTCGCGCGGACCCTGCCG
GTGCGCCTGCAGCGGCATACCCGCTGGTGGGTGAGGGTGGTCGCCGCCTGA