ViewGene
Locus Name:
GeneID:
Location:

GeneID:2192
TrivialName: PA14_44830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44830
PAO1 Ortholog Locus:PA1517
Sequence Length:927
Protein Length:308
Start: 3995127
Stop: 3996053
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04906.1|AE004580_6 (AE004580) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 307/308 (99%), Positives = 307/308 (99%)
Sequence:
GTGAGCGCTGACTACCCACGCGACCTGATCGGATACGGCAACAACCCTCCCCACCCTCACTGGCCCGGCGAT
GCGCGCATCGCCCTGTCCTTCGTGCTCAATTACGAAGAAGGTGGCGAGCGCTGCGTCCTGCATGGCGACAAG
GAGTCCGAGGCGTTCCTTTCCGAAATGGTGGCTGCCCAGCCCTTGCAGGGCGTGCGCCACATGAGCATGGAA
TCGCTCTACGAATACGGCAGCCGCGCCGGGGTCTGGCGCCTGCTCAAGCTGTTCAAGCGACGCAACGTGCCG
CTCACCGTGTTCGCCGTGGCCATGGCGGCGCAGCGCAACCCTGAGGTGATCAGGGCGATGGTCGCCGACGGC
CACGAAATCTGCAGCCACGGCTACCGCTGGATCGACTACCAGTACATGGACGAGGCCCAGGAGCGCGAGCAC
ATGCTCGAAGCCATCCGCATCCTCACCGAACTCACCGGCCAGCGCCCGGTGGGCTGCTACACCGGACGCACC
GGCCCGAACACCCGGCGCCTGGTGATGGAGGAAGGCGGCTTCCTCTATGACTCCGACACCTACGACGACGAC
CTGCCCTACTGGGACCCGGCCAGCACCGCGGAGAAACCGCATCTGGTGATTCCCTATACCCTGGACACCAAC
GACATGCGCTTCACCCAGGTGCAGGGCTTCAACAATGGCGAGCAGTTCTTCCAGTACCTGAAGGACGCCTTC
GACGTGCTCTACGAAGAAGGCGCGACGGCGCCGAAGATGCTCTCCATCGGCCTGCATTGCCGGTTGATCGGT
CGCCCGGCGCGGATGGCCGCCCTGGAGCGCTTCATCCAGTACGCGCAGAGCCACGACAAGGTCTGGTTCGCC
CGCCGCGAAGACATCGCCCGCCATTGGCACCGTGAGCATCCTTTCCAGGAGACCGAGGCATGA
Translation:
MSADYPRDLIGYGNNPPHPHWPGDARIALSFVLNYEEGGERCVLHGDKESEAFLSEMVAAQPLQGVRHMSME
SLYEYGSRAGVWRLLKLFKRRNVPLTVFAVAMAAQRNPEVIRAMVADGHEICSHGYRWIDYQYMDEAQEREH
MLEAIRILTELTGQRPVGCYTGRTGPNTRRLVMEEGGFLYDSDTYDDDLPYWDPASTAEKPHLVIPYTLDTN
DMRFTQVQGFNNGEQFFQYLKDAFDVLYEEGATAPKMLSIGLHCRLIGRPARMAALERFIQYAQSHDKVWFA
RREDIARHWHREHPFQETEA*
AnnotationID:2200GeneID:2192
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 07:07:53
Gene Name:
Confidence Code:3
GeneProduct:putative polysaccharide deacetylase
Cell Localization:()
Synonyms:PA1517
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01522
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69866.1|AE016626_1 (AE016790) polysaccharide deacetylase family protein [Pseudomonas
           putida KT2440]
          Length = 308

 Score =  561 bits (1447), Expect = e-159
 Identities = 266/308 (86%), Positives = 284/308 (92%)

>gb|AAO57135.1| (AE016869) polysaccharide deacetylase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 309

 Score =  553 bits (1425), Expect = e-157
 Identities = 258/303 (85%), Positives = 283/303 (93%)






 
Structural Features:
pfam01522, Polysacc_deac_1, Polysaccharide deacetylase. 
CD-Length = 124 residues,  99.2% aligned
Score = 93.8 bits (233), Expect = 2e-20
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 1/123 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14529




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21533




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37332




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2192_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2192
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3737
                           PA1517_tr
                           translation of PA1517
                           308
                           99.67
                           99.67
                           0
                           1656.0
     

     
     
115407
                           gb|AAG04906.1|AE004580_6
                           (AE004580) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           308
                           99.35
                           99.67
                           0
                           1653.0
     

     
     
115408
                           gb|AAN69866.1|AE016626_1
                           (AE016790) polysaccharide deacetylase family protein [Pseudomonas putida KT2440]
                           308
                           86.03
                           92.20
                           0
                           1443.0
     

     
     
115409
                           gb|AAO57135.1|
                           (AE016869) polysaccharide deacetylase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           309
                           83.49
                           91.90
                           1
                           1420.0
     

     
     
115410
                           emb|CAD15827.1|
                           (AL646068) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           331
                           61.93
                           72.20
                           26
                           1101.0
     

     






      

          
GC ORFID: 45194How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1517Glimmer Score: 

          
Start: 958782Stop: 957856

          
Length: 927


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1517 translation of PA1517Homolog Bit Score 642.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene587 (ORF: BLASTX 555.0), t_PA1517 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGCTGACTACCCACGCGACCTGATCGGATACGGCAACAACCCTCCCCACCCTCACTGGCCCGGCGAT 
GCGCGCATCGCCCTGTCCTTCGTGCTCAATTACGAAGAAGGTGGCGAGCGCTGCGTCCTGCATGGCGACAAG 
GAGTCCGAGGCGTTCCTTTCCGAAATGGTGGCTGCCCAGCCCTTGCAGGGCGTGCGCCACATGAGCATGGAA 
TCGCTCTACGAATACGGCAGCCGCGCCGGGGTCTGGCGCCTGCTCAAGCTGTTCAAGCGACGCAACGTGCCG 
CTCACCGTGTTCGCCGTGGCCATGGCGGCGCAGCGCAACCCTGAGGTGATCAGGGCGATGGTCGCCGACGGC 
CACGAAATCTGCAGCCACGGCTACCGCTGGATCGACTACCAGTACATGGACGAGGCCCAGGAGCGCGAGCAC 
ATGCTCGAAGCCATCCGCATCCTCACCGAACTCACCGGCCAGCGCCCGGTGGGCTGCTACACCGGACGCACC 
GGCCCGAACACCCGGCGCCTGGTGATGGAGGAAGGCGGCTTCCTCTATGACTCCGACACCTACGACGACGAC 
CTGCCCTACTGGGACCCGGCCAGCACCGCGGAGAAACCGCATCTGGTGATTCCCTATACCCTGGACACCAAC 
GACATGCGCTTCACCCAGGTGCAGGGCTTCAACAATGGCGAGCAGTTCTTCCAGTACCTGAAGGACGCCTTC 
GACGTGCTCTACGAAGAAGGCGCGACGGCGCCGAAGATGCTCTCCATCGGCCTGCATTGCCGGTTGATCGGT 
CGCCCGGCGCGGATGGCCGCCCTGGAGCGCTTCATCCAGTACGCGCAGAGCCACGACAAGGTCTGGTTCGCC 
CGCCGCGAAGACATCGCCCGCCATTGGCACCGTGAGCATCCTTTCCAGGAGACCGAGGCATGA