ViewGene
Locus Name:
GeneID:
Location:

GeneID:2191
TrivialName: PA14_50130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50130
PAO1 Ortholog Locus:PA1102
Sequence Length:1017
Protein Length:338
Start: 4455724
Stop: 4454708
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04491.1|AE004540_11 (AE004540) flagellar motor switch protein FliG [Pseudomonas aeruginosa PAO1]
Identities = 338/338 (100%), Positives = 338/338 (100%)
Sequence:
ATGAGTGAGAATCGTCTCGCCGCCAAACTGACCAAGGTCGACAAGGCCGCCATCCTGCTCCTGTCGCTCGGC
GAGACCGACGCGGCGCAGGTGCTGCGGCACATGGGACCGAAAGAGGTGCAGCGGGTCGGCGTGGCCATGGCG
TCGATGCGCAACGTGCATCGCGAACAGGTCGAGCAGGTGATGGGCGAGTTCGTCGAAGTGGTCGGCGACCAG
ACCAGCCTCGGCGTCGGTGCCGACGGCTACATCCGCAAGATGCTCACCCAGGCCCTCGGCGAGGACAAGGCC
AACAACCTGATCGACCGCATCCTCCTCGGCGGCAGCACCAGCGGCCTGGACAGCCTGAAGTGGATGGAGCCG
CGTGCCGTGGCCGACGTGATCCGTTACGAACACCCGCAGATCCAGGCCATCGTGGTCGCCTACCTCGATCCC
GACCAGGCCGCCGAGGTGCTCAGCCATTTCGACCACAAGGTGCGCCTGGATATCGTCCTGCGCGTCTCCTCG
CTGAACACCGTGCAGCCCTCGGCGCTGAAGGAACTCAACCTGATCCTGGAGAAGCAGTTCGCCGGCAATTCC
AACGCCACCCGCACTACCATGGGCGGGGTCAAGCGCGCGGCGGACATCATGAACTACCTCGACAGCTCCATC
GAAGGCCAGCTGATGGATTCGATCCGCGAGGTCGACGAAGACCTGTCCGGACAGATCGAGGACCTGATGTTC
GTCTTCGACAACCTCGCCGACGTCGACGACCGCGGCATCCAGGCGCTGCTCCGGGAAGTCTCCTCGGACGTA
CTGGTGCTGGCGCTCAAGGGCTCCGACGAGGCGATCCGCGAGAAGGTCTTCAAGAACATGTCCAAGCGTGCC
GCCGAGCTGCTGCGCGACGACCTGGAGGCCAAGGGGCCGGTACGGGTCAGCGAAGTGGAAGGTGCGCAGAAG
GAAATCCTCACCATTGCCCGGCGCATGGCCGAGTCCGGCGATATCGTGCTGGGCGGCAAGGGTGGCGAGGAG
ATGATCTGA
Translation:
MSENRLAAKLTKVDKAAILLLSLGETDAAQVLRHMGPKEVQRVGVAMASMRNVHREQVEQVMGEFVEVVGDQ
TSLGVGADGYIRKMLTQALGEDKANNLIDRILLGGSTSGLDSLKWMEPRAVADVIRYEHPQIQAIVVAYLDP
DQAAEVLSHFDHKVRLDIVLRVSSLNTVQPSALKELNLILEKQFAGNSNATRTTMGGVKRAADIMNYLDSSI
EGQLMDSIREVDEDLSGQIEDLMFVFDNLADVDDRGIQALLREVSSDVLVLALKGSDEAIREKVFKNMSKRA
AELLRDDLEAKGPVRVSEVEGAQKEILTIARRMAESGDIVLGGKGGEEMI*
AnnotationID:2199GeneID:2191
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 12:12:53
Gene Name:fliG
Confidence Code:2
GeneProduct:flagellar motor switch protein FliG
Cell Localization:(5) Inner membrane-associated
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1536
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly 
Homology:






 
Structural Features:
COG1536, FliG, Flagellar motor switch protein [Cell motility and secretion]
             CD-Length = 339 residues,  97.1% aligned
             Score =  345 bits (886), Expect = 5e-96






   
Genomic Context:
fliFGHI (Ecoli) 






   
Comment:


















    ReferenceID:4385




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21531




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32715




  
Author/Investigator(s):
        Roman SJ, Frantz BB, Matsumura P.





  
Title:
        Gene sequence, overproduction, purification and determination of the wild-type level of the Escherichia coli flagellar switch protein FliG.





  
PubMed:
        94040782


MedLine:
        




    
Source:
Gene. 1993 Oct 29;133(1):103-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:

















    ReferenceID:32716




  
Author/Investigator(s):
        Arora SK, Ritchings BW, Almira EC, Lory S, Ramphal R.







  
Title:
        Cloning and characterization of Pseudomonas aeruginosa fliF, necessary for flagellar assembly and bacterial adherence to mucin.





  
PubMed:
        96239027


MedLine:
        




    
Source:
Infect Immun. 1996 Jun;64(6):2130-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2191
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3736
                           PA1102_tr
                           translation of PA1102
                           338
                           99.99
                           99.99
                           0
                           1656.0
     

     
     
115369
                           gb|AAG04491.1|AE004540_11
                           (AE004540) flagellar motor switch protein FliG [Pseudomonas aeruginosa PAO1]
                           338
                           99.99
                           99.99
                           0
                           1656.0
     

     
     
115370
                           gb|AAO55477.1|
                           (AE016862) flagellar motor switch protein FliG [Pseudomonas syringae pv. tomato str. DC3000]
                           338
                           87.27
                           94.97
                           5
                           1487.0
     

     
     
115371
                           gb|AAN69946.1|AE016633_4
                           (AE016790) flagellar motor switch protein FliG [Pseudomonas putida KT2440]
                           338
                           77.51
                           85.50
                           34
                           1335.0
     

     
     
115372
                           gb|AAB06802.1|
                           (L43507) flagellar motor switch protein [Pseudomonas aeruginosa]
                           338
                           67.45
                           67.45
                           110
                           1125.0
     

     






      

          
GC ORFID: 45193How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1102Glimmer Score: 

          
Start: 498184Stop: 499200

          
Length: 1017


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1102 translation of PA1102Homolog Bit Score 642.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7919 (ORF: BLASTX 578.0), t_PA1102 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGAGAATCGTCTCGCCGCCAAACTGACCAAGGTCGACAAGGCCGCCATCCTGCTCCTGTCGCTCGGC 
GAGACCGACGCGGCGCAGGTGCTGCGGCACATGGGACCGAAAGAGGTGCAGCGGGTCGGCGTGGCCATGGCG 
TCGATGCGCAACGTGCATCGCGAACAGGTCGAGCAGGTGATGGGCGAGTTCGTCGAAGTGGTCGGCGACCAG 
ACCAGCCTCGGCGTCGGTGCCGACGGCTACATCCGCAAGATGCTCACCCAGGCCCTCGGCGAGGACAAGGCC 
AACAACCTGATCGACCGCATCCTCCTCGGCGGCAGCACCAGCGGCCTGGACAGCCTGAAGTGGATGGAGCCG 
CGTGCCGTGGCCGACGTGATCCGTTACGAACACCCGCAGATCCAGGCCATCGTGGTCGCCTACCTCGATCCC 
GACCAGGCCGCCGAGGTGCTCAGCCATTTCGACCACAAGGTGCGCCTGGATATCGTCCTGCGCGTCTCCTCG 
CTGAACACCGTGCAGCCCTCGGCGCTGAAGGAACTCAACCTGATCCTGGAGAAGCAGTTCGCCGGCAATTCC 
AACGCCACCCGCACTACCATGGGCGGGGTCAAGCGCGCGGCGGACATCATGAACTACCTCGACAGCTCCATC 
GAAGGCCAGCTGATGGATTCGATCCGCGAGGTCGACGAAGACCTGTCCGGACAGATCGAGGACCTGATGTTC 
GTCTTCGACAACCTCGCCGACGTCGACGACCGCGGCATCCAGGCGCTGCTCCGGGAAGTCTCCTCGGACGTA 
CTGGTGCTGGCGCTCAAGGGCTCCGACGAGGCGATCCGCGAGAAGGTCTTCAAGAACATGTCCAAGCGTGCC 
GCCGAGCTGCTGCGCGACGACCTGGAGGCCAAGGGGCCGGTACGGGTCAGCGAAGTGGAAGGTGCGCAGAAG 
GAAATCCTCACCATTGCCCGGCGCATGGCCGAGTCCGGCGATATCGTGCTGGGCGGCAAGGGTGGCGAGGAG 
ATGATCTGA