ViewGene

Locus Name:
GeneID:
Location:

GeneID:2190
TrivialName: PA14_07050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07050
PAO1 Ortholog Locus:PA0543
Sequence Length:969
Protein Length:322
Start: 610401
Stop: 611369
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03932.1|AE004490_12 (AE004490) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 315/322 (97%), Positives = 316/322 (98%)
Sequence:
ATGCGTACGCTGATCCGCCTGGTTCGCACGCTTATCCTGCTGCTGGTCCTGGCGCTGCTCGCCGGCGCCTGG
TGGTGGCTGCAGGACGAGGCCCTGCGCACCCCCGCGCTGGCCGGCCACAGCGAGGACTCGAGCCTGAAGGTC
GCGGGCCTGCGCCGGCATTACCTGCTCTACGTGCCGCCGGGCGTGACCGAGGGAGCGCCGTTGCTGGTGGTG
CTGCACGGCTCACGGGGCGACGGCGCGCAGATGCGCCGCATCAGCGGCTACGGCTTCGACCGGCTGGCGGCG
CAAGAAGGTTTCCTGGTGGCCTACCCGGACGGCTTCGAGGGCCACTGGAACGATTGCCGCAAGGCCGCCAGC
TATTCGGCGCGGCTGCGTGACGTCGATGACGTGGCTTTCCTCCGCGCGCTGGTGGCGCGGCTGGCCCAGGAA
TACCGCGTCGATCCGCAGCGGGTATATGTCGCCGGCTACTCCAATGGCGGCCAGATGGCTTTCCGCCTGGCC
GCCGAAGCACCGGGGTTGCCGGCGGCGATCGCAACGGTGGCGGCGAGCCTGCCGACCACGGAGAACGATGCC
TGTCGGCCGGTCGAGCGGCCGACCGCGGCGTTGCTGATCAACGGCACGCGCGATCCGATCAATCCCTATCTC
GGCGGCAAGGTCAGCCTGTTCGGCTTCGGCGACCGGGGCGCGGTACGCTCGACCCTGGACTCGGCACGCTGG
TGGGCCGGCCTGAACGGCATCGCCGCGCCGCCGGCCGTGGCGCCGCTGACCCGTCCCGGCCCGGTCTGGACC
GAGCGCCAGCGCTGGCAGGAAGACGGCCATCCGCCGGTGGAGCTGCTCAGCGTGCATGGCGGCGGCCACGTG
CTGGCGCAGCCGGACTATCGCTTCCCGCGGATTCTCGGCAAGAGCGACCCGGAACTGGACGCGCCAGCGGAA
ATCTGGCGCTTCTTCAGCCAGTTGCCGCGCTGA
Translation:
MRTLIRLVRTLILLLVLALLAGAWWWLQDEALRTPALAGHSEDSSLKVAGLRRHYLLYVPPGVTEGAPLLVV
LHGSRGDGAQMRRISGYGFDRLAAQEGFLVAYPDGFEGHWNDCRKAASYSARLRDVDDVAFLRALVARLAQE
YRVDPQRVYVAGYSNGGQMAFRLAAEAPGLPAAIATVAASLPTTENDACRPVERPTAALLINGTRDPINPYL
GGKVSLFGFGDRGAVRSTLDSARWWAGLNGIAAPPAVAPLTRPGPVWTERQRWQEDGHPPVELLSVHGGGHV
LAQPDYRFPRILGKSDPELDAPAEIWRFFSQLPR*
AnnotationID:2198GeneID:2190
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 18:06:42
Gene Name:
Confidence Code:3
GeneProduct:putative depolymerase
Cell Localization:()
Synonyms:PA0543
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3509
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 312 residues,  99.0% aligned
Score =  309 bits (794), Expect = 2e-85
Identities = 147/324 (45%), Positives = 173/324 (53%), Gaps = 17/324 (5%)

Genomic Context:
Comment:
ReferenceID:4383
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21529
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33840
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2190_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2190

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3735 PA0543_tr translation of PA0543 322 97.82 98.13 0 1658.0
115368 gb|AAG03932.1|AE004490_12 (AE004490) hypothetical protein PA0543 [Pseudomonas aeruginosa PAO1] 322 97.82 98.13 0 1658.0
GC ORFID: 45192How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0543Glimmer Score:
Start: 6411743Stop: 6412711
Length: 969
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0543 translation of PA0543Homolog Bit Score 643.0
Other Homologs: t_PA0543 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTACGCTGATCCGCCTGGTTCGCACGCTTATCCTGCTGCTGGTCCTGGCGCTGCTCGCCGGCGCCTGG
TGGTGGCTGCAGGACGAGGCCCTGCGCACCCCCGCGCTGGCCGGCCACAGCGAGGACTCGAGCCTGAAGGTC
GCGGGCCTGCGCCGGCATTACCTGCTCTACGTGCCGCCGGGCGTGACCGAGGGAGCGCCGTTGCTGGTGGTG
CTGCACGGCTCACGGGGCGACGGCGCGCAGATGCGCCGCATCAGCGGCTACGGCTTCGACCGGCTGGCGGCG
CAAGAAGGTTTCCTGGTGGCCTACCCGGACGGCTTCGAGGGCCACTGGAACGATTGCCGCAAGGCCGCCAGC
TATTCGGCGCGGCTGCGTGACGTCGATGACGTGGCTTTCCTCCGCGCGCTGGTGGCGCGGCTGGCCCAGGAA
TACCGCGTCGATCCGCAGCGGGTATATGTCGCCGGCTACTCCAATGGCGGCCAGATGGCTTTCCGCCTGGCC
GCCGAAGCACCGGGGTTGCCGGCGGCGATCGCAACGGTGGCGGCGAGCCTGCCGACCACGGAGAACGATGCC
TGTCGGCCGGTCGAGCGGCCGACCGCGGCGTTGCTGATCAACGGCACGCGCGATCCGATCAATCCCTATCTC
GGCGGCAAGGTCAGCCTGTTCGGCTTCGGCGACCGGGGCGCGGTACGCTCGACCCTGGACTCGGCACGCTGG
TGGGCCGGCCTGAACGGCATCGCCGCGCCGCCGGCCGTGGCGCCGCTGACCCGTCCCGGCCCGGTCTGGACC
GAGCGCCAGCGCTGGCAGGAAGACGGCCATCCGCCGGTGGAGCTGCTCAGCGTGCATGGCGGCGGCCACGTG
CTGGCGCAGCCGGACTATCGCTTCCCGCGGATTCTCGGCAAGAGCGACCCGGAACTGGACGCGCCAGCGGAA
ATCTGGCGCTTCTTCAGCCAGTTGCCGCGCTGA