ViewGene
Locus Name:
GeneID:
Location:

GeneID:219
TrivialName: PA14_62020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62020
PAO1 Ortholog Locus:PA4689
Sequence Length:2307
Protein Length:768
Start: 5534582
Stop: 5532276
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08076.1|AE004882_7 (AE004882) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 768/768 (100%), Positives = 768/768 (100%)
Sequence:
ATGAGTGATCTGCCAAGTCCGAAGAAACACAAGACCTCGAACTGGTCGGCGATCTGGGTGCTGCCGCTGGTG
GCCCTGGCCATCGGTGCCTGGCTGGCGTGGCGTGCCTTCGACCAGGCTGGCGTGGACATCCAGGTTCGCTTC
GAGAGCGGCGACGGGATCCAGGCCAACAAGACCGAGGTGCTGTACAAGGGCATCTCGGTGGGCAAGGTGACC
GACCTGCATGTCAGCAAGGACATCAAGGGCGTGGTCGCGACCATCGAGATCAAGAAGGAAGCCCAGGAATAT
CTGAGCAAGGACACCCGCTTCTGGCTGGTCAAGCCGCGGGTTTCCCTGGCTGGCGTCACCGGCCTGGAAACC
CTGGTCTCCGGCGTCTACATCGCGGTCGATCCGGTGAAGGGCGAGAAGGAAGAACGCTACTTCACCGCGTTG
AAGGAGCCGCCACCCCTTTCCGACAAGCTGCCCGGCCTGCACCTGACCCTCAAGGCCGATCGCCTGGGCTCC
CTGGAGCAGGGCAGCCCGGTGTTCTACCGGCAGATCCAGGTCGGCCAGGTGAAGAGCTTCCAGCTGGGCGAT
GACCAGAGGACCATCGAGATCAAGGTGCACATCGAGCCGGCCTACGCCGACCTGGTGCGCAAGCACACGCGA
TTCTGGAACGCCAGCGGCATCTCCATTTCCGGCGGCCTGTCCGGCTTCAAGGTGCACAGCGAGTCGCTGCTG
ACCCTGGTCGCCGGCGGTATCGCCTTCTCTACCCCGGAGAACCGCACCGACAGCCCGCCGACCGATCCGAGC
AAGCCGTTCCGCCTGTACGACGACTACGACGCGGCCCAGGCCGGTCTGCGCGTGAAGCTGAAGATGAACGAC
GTCAGTGGTATCGATCCAGGGCGCACCCCGGTGATGTTCAACGGCGTGCAGGTCGGCCTGGTCAAGTCGATC
GACATGGGCAAGGACTACAGCAGCGCCACTGCCGACCTGGCGATGGATCCGCGGGTCGAGGACATGCTGCTG
GAAGGCACCGAATTCTGGACCGTCAAGCCAAGCATCTCCCTGGCCGGCATCACCGGCCTCGAGGCCCTGGTG
AAAGGTAACTACATCGATGTGCGCTTCGCCAAGAGCGGCGCGCCGAGTCGCGAGTTCACCATCCGCCCGAAA
GCGCCGCCGCTGAACACCGACGCGCCCGGCCTGCACCTGGTGCTGACCAGCGACAAGCTCGGCTCGATCGAT
ATCGGCGCGCCGATCCTCTACCGCCAGGTCCGCGTCGGCAGCGTGCAGAGCTACCAGCTGTCGCGCGACCGC
CAGCGAGTGGTGGTGGGTGTGCACATCGAGCCGGAGTACGCGCACCTGGTGAATACCTCGACGCGCTTCTGG
AACTCCAGCGGGATCACCCTGACCGGCAACCTCAGCGGCGTGCAGGTGAAGAGCGAGTCGCTACAGACCCTG
ATCACCGGCGGGATTTCCTTCGACACCCTCGATCCGAAGGCGCCGACCGTGACCAAGGTGCGTCGCTTCACC
CTCTTCGACAGCGAGGAGGCGGCGATGGCCCGTGGCGTGGAGATCCAGCTGAGCATCGACAATGCCGATGGA
CTGCGCGAAGGCACGCCGATCCGCTTCAAGGGCCTGGACATCGGCAAGATCGAAAGCGTCGAGCTGAACCCG
GACCTCTCCGGGGTACTGATGAAGGCCCGCCTGACTTCCGCCGGCGAGCGCGTCGCCCGCAGCGGAACCCGC
TTCTGGGTGGTACGTCCGGCGCTCGGCCTGCTGCGTACCGAGAACCTCGGAACCCTGGTCAGCGGCCCCTAT
ATCGAGGCGCTGCCGTCGAGCACGCCGGGCGAGCGCCAGGCACGCTTCCAGACTCTCGCCGAAGCGCCCAAC
CTGCTGGGCCGGGAAAATGGCCTGCGGCTGACCCTCAGTGCGCCGCGCAAGGGCTCGATCAAGCCGGGCAAC
CTGGTGACCTACCGGCAGATCCCGGTGGGCAAGGTCGTCGACCTGGCCTTGGGCGAACAGGCCGACCGGGTG
CTGATCAGCATCCTCATCGAACCGCGCTACGTACCGCTGGTGCGTACCGGCAGCCGTTTCTGGAATGCCAGC
GGCTTCGGCGTCGACGCCAGCCTGTTCAAAGGCCTGTCGCTACGCACCGAGTCGATGGAGGCGCTGATGGAG
GGCGGCATTGCCTTCGCCACCCCGAACAATGCGCAGATGGGCGAGCCCGCCAAGCCGGGGCAGACCTTCGCC
CTGTTCGATTCGGCCAATGACGAATGGTTGGAGTGGGCGCCGAAGATTCCTCTGAAGGAAACCGCCCGCCGC
TGA
Translation:
MSDLPSPKKHKTSNWSAIWVLPLVALAIGAWLAWRAFDQAGVDIQVRFESGDGIQANKTEVLYKGISVGKVT
DLHVSKDIKGVVATIEIKKEAQEYLSKDTRFWLVKPRVSLAGVTGLETLVSGVYIAVDPVKGEKEERYFTAL
KEPPPLSDKLPGLHLTLKADRLGSLEQGSPVFYRQIQVGQVKSFQLGDDQRTIEIKVHIEPAYADLVRKHTR
FWNASGISISGGLSGFKVHSESLLTLVAGGIAFSTPENRTDSPPTDPSKPFRLYDDYDAAQAGLRVKLKMND
VSGIDPGRTPVMFNGVQVGLVKSIDMGKDYSSATADLAMDPRVEDMLLEGTEFWTVKPSISLAGITGLEALV
KGNYIDVRFAKSGAPSREFTIRPKAPPLNTDAPGLHLVLTSDKLGSIDIGAPILYRQVRVGSVQSYQLSRDR
QRVVVGVHIEPEYAHLVNTSTRFWNSSGITLTGNLSGVQVKSESLQTLITGGISFDTLDPKAPTVTKVRRFT
LFDSEEAAMARGVEIQLSIDNADGLREGTPIRFKGLDIGKIESVELNPDLSGVLMKARLTSAGERVARSGTR
FWVVRPALGLLRTENLGTLVSGPYIEALPSSTPGERQARFQTLAEAPNLLGRENGLRLTLSAPRKGSIKPGN
LVTYRQIPVGKVVDLALGEQADRVLISILIEPRYVPLVRTGSRFWNASGFGVDASLFKGLSLRTESMEALME
GGIAFATPNNAQMGEPAKPGQTFALFDSANDEWLEWAPKIPLKETARR*
AnnotationID:229GeneID:219
AnnotatorUID: danlee
Modification Date/Time: 2006-03-21 13:01:12
Gene Name:
Confidence Code:4
GeneProduct:paraquat-inducible protein B-like protein
Cell Localization:()
Synonyms:PA4689
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3008
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|9950946|gb|AAG08076.1|  hypothetical protein PA4689 [Pseudomonas aeruginosa PAO1]
 gi|46165107|ref|ZP_00205278.1|  COG3008: Paraquat-inducible protein B [Pseudomonas aeruginosa 
UCBPP-PA14]
 gi|15599884|ref|NP_253378.1|  hypothetical protein PA4689 [Pseudomonas aeruginosa PAO1]
 gi|84323400|ref|ZP_00971471.1|  COG3008: Paraquat-inducible protein B [Pseudomonas aeruginosa 
2192]
 gi|84317315|ref|ZP_00965765.1|  COG3008: Paraquat-inducible protein B [Pseudomonas aeruginosa 
C3719]
Length=768

 Score = 1506 bits (3898),  Expect = 0.0, Method: Composition-based stats.
 Identities = 768/768 (100%), Positives = 768/768 (100%), Gaps = 0/768 (0%)

gi|12698379|gb|AAK01493.1|  paraquat-inducible protein B [Pseudomonas aeruginosa]
Length=767

 Score = 1436 bits (3717),  Expect = 0.0, Method: Composition-based stats.
 Identities = 735/767 (95%), Positives = 749/767 (97%), Gaps = 0/767 (0%)






 
Structural Features:
COG3008, PqiB, Paraquat-inducible protein B [General function prediction only].
             CD-Length = 553 residues,  97.5% aligned
             Score =  565 bits (1458), Expect = 7e-162

COG3008, PqiB, Paraquat-inducible protein B [General function prediction only].
             CD-Length = 553 residues,  81.9% aligned
             Score =  294 bits (753), Expect = 4e-80






   
Genomic Context:






   
Comment:
Highly similar to paraquat-inducible protein B, PAGI-1(3), GID255 (PA14_36020): 
     Identities = 764/767 (99%), Positives = 765/767 (99%)


















    ReferenceID:441




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17583




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38230




  
Author/Investigator(s):
        Y S Koh and J H Roe





  
Title:
        Isolation of a novel paraquat-inducible (pqi) gene regulated by the soxRS locus in Escherichia coli.




  
PubMed:
        7751275


MedLine:
        




    
Source:
J Bacteriol. 1995 May;177(10):2673-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=7751275

















    ReferenceID:38237




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:219_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:219
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
384
                           PA4689_tr
                           translation of PA4689
                           768
                           99.99
                           99.99
                           0
                           3915.0
     

     
     
22356
                           gb|AAG08076.1|AE004882_7
                           (AE004882) hypothetical protein PA4689 [Pseudomonas aeruginosa PAO1]
                           768
                           99.99
                           99.99
                           0
                           3915.0
     

     
     
22357
                           gb|AAK01493.1|
                           (AF241171) paraquat-inducible protein B [Pseudomonas aeruginosa]
                           768
                           95.70
                           97.52
                           1
                           3742.0
     

     
     
22358
                           gb|AAN66225.1|AE016251_1
                           (AE016776) PqiB family protein [Pseudomonas putida KT2440]
                           771
                           63.81
                           78.59
                           8
                           2568.0
     

     
     
22359
                           dbj|BAA15642.1|
                           (D90826) Paraquat-inducible protein B (fragment). [Escherichia coli]
                           774
                           14.08
                           20.80
                           507
                           509.0
     

     






      

          
GC ORFID: 43221How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4689Glimmer Score: 

          
Start: 4798262Stop: 4795956

          
Length: 2307


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4689 translation of PA4689Homolog Bit Score 1512.0

          
Other Homologs:  t_PA4689 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGATCTGCCAAGTCCGAAGAAACACAAGACCTCGAACTGGTCGGCGATCTGGGTGCTGCCGCTGGTG 
GCCCTGGCCATCGGTGCCTGGCTGGCGTGGCGTGCCTTCGACCAGGCTGGCGTGGACATCCAGGTTCGCTTC 
GAGAGCGGCGACGGGATCCAGGCCAACAAGACCGAGGTGCTGTACAAGGGCATCTCGGTGGGCAAGGTGACC 
GACCTGCATGTCAGCAAGGACATCAAGGGCGTGGTCGCGACCATCGAGATCAAGAAGGAAGCCCAGGAATAT 
CTGAGCAAGGACACCCGCTTCTGGCTGGTCAAGCCGCGGGTTTCCCTGGCTGGCGTCACCGGCCTGGAAACC 
CTGGTCTCCGGCGTCTACATCGCGGTCGATCCGGTGAAGGGCGAGAAGGAAGAACGCTACTTCACCGCGTTG 
AAGGAGCCGCCACCCCTTTCCGACAAGCTGCCCGGCCTGCACCTGACCCTCAAGGCCGATCGCCTGGGCTCC 
CTGGAGCAGGGCAGCCCGGTGTTCTACCGGCAGATCCAGGTCGGCCAGGTGAAGAGCTTCCAGCTGGGCGAT 
GACCAGAGGACCATCGAGATCAAGGTGCACATCGAGCCGGCCTACGCCGACCTGGTGCGCAAGCACACGCGA 
TTCTGGAACGCCAGCGGCATCTCCATTTCCGGCGGCCTGTCCGGCTTCAAGGTGCACAGCGAGTCGCTGCTG 
ACCCTGGTCGCCGGCGGTATCGCCTTCTCTACCCCGGAGAACCGCACCGACAGCCCGCCGACCGATCCGAGC 
AAGCCGTTCCGCCTGTACGACGACTACGACGCGGCCCAGGCCGGTCTGCGCGTGAAGCTGAAGATGAACGAC 
GTCAGTGGTATCGATCCAGGGCGCACCCCGGTGATGTTCAACGGCGTGCAGGTCGGCCTGGTCAAGTCGATC 
GACATGGGCAAGGACTACAGCAGCGCCACTGCCGACCTGGCGATGGATCCGCGGGTCGAGGACATGCTGCTG 
GAAGGCACCGAATTCTGGACCGTCAAGCCAAGCATCTCCCTGGCCGGCATCACCGGCCTCGAGGCCCTGGTG 
AAAGGTAACTACATCGATGTGCGCTTCGCCAAGAGCGGCGCGCCGAGTCGCGAGTTCACCATCCGCCCGAAA 
GCGCCGCCGCTGAACACCGACGCGCCCGGCCTGCACCTGGTGCTGACCAGCGACAAGCTCGGCTCGATCGAT 
ATCGGCGCGCCGATCCTCTACCGCCAGGTCCGCGTCGGCAGCGTGCAGAGCTACCAGCTGTCGCGCGACCGC 
CAGCGAGTGGTGGTGGGTGTGCACATCGAGCCGGAGTACGCGCACCTGGTGAATACCTCGACGCGCTTCTGG 
AACTCCAGCGGGATCACCCTGACCGGCAACCTCAGCGGCGTGCAGGTGAAGAGCGAGTCGCTACAGACCCTG 
ATCACCGGCGGGATTTCCTTCGACACCCTCGATCCGAAGGCGCCGACCGTGACCAAGGTGCGTCGCTTCACC 
CTCTTCGACAGCGAGGAGGCGGCGATGGCCCGTGGCGTGGAGATCCAGCTGAGCATCGACAATGCCGATGGA 
CTGCGCGAAGGCACGCCGATCCGCTTCAAGGGCCTGGACATCGGCAAGATCGAAAGCGTCGAGCTGAACCCG 
GACCTCTCCGGGGTACTGATGAAGGCCCGCCTGACTTCCGCCGGCGAGCGCGTCGCCCGCAGCGGAACCCGC 
TTCTGGGTGGTACGTCCGGCGCTCGGCCTGCTGCGTACCGAGAACCTCGGAACCCTGGTCAGCGGCCCCTAT 
ATCGAGGCGCTGCCGTCGAGCACGCCGGGCGAGCGCCAGGCACGCTTCCAGACTCTCGCCGAAGCGCCCAAC 
CTGCTGGGCCGGGAAAATGGCCTGCGGCTGACCCTCAGTGCGCCGCGCAAGGGCTCGATCAAGCCGGGCAAC 
CTGGTGACCTACCGGCAGATCCCGGTGGGCAAGGTCGTCGACCTGGCCTTGGGCGAACAGGCCGACCGGGTG 
CTGATCAGCATCCTCATCGAACCGCGCTACGTACCGCTGGTGCGTACCGGCAGCCGTTTCTGGAATGCCAGC 
GGCTTCGGCGTCGACGCCAGCCTGTTCAAAGGCCTGTCGCTACGCACCGAGTCGATGGAGGCGCTGATGGAG 
GGCGGCATTGCCTTCGCCACCCCGAACAATGCGCAGATGGGCGAGCCCGCCAAGCCGGGGCAGACCTTCGCC 
CTGTTCGATTCGGCCAATGACGAATGGTTGGAGTGGGCGCCGAAGATTCCTCTGAAGGAAACCGCCCGCCGC 
TGA