ViewGene
Locus Name:
GeneID:
Location:

GeneID:2189
TrivialName: PA14_58490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58490
PAO1 Ortholog Locus:PA4506
Sequence Length:972
Protein Length:323
Start: 5208616
Stop: 5209587
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07894.1|AE004864_6 (AE004864) probable ATP-binding component of ABC dipeptide transporter [Pseudomonas aeruginosa PAO1]
Identities = 322/323 (99%), Positives = 323/323 (100%)
Sequence:
ATGGAAACCGTTCTGACCGCCCGTGATCTGACCCGTCACTACGAAGTCTCCCGCGGCCTGTTCAAGGGCCAT
GCCCAGGTGCGCGCGCTGAACGGCGTATCGTTCGAACTGGAAGCCGGCAAGACCCTCGCCGTGGTCGGCGAG
TCCGGCTGCGGCAAGTCGACCCTGGCGCGCGCCCTGACCCTGATCGAGGAACCCACCTCCGGCTCGCTGAAA
ATCGCCGGGCAGGAGGTCAAGGGCGCCAGCAAGGACCAGCGCCGGCAGTTGCGCCGCGACGTGCAGATGGTC
TTCCAGAACCCCTACGCCTCGCTCAATCCGCGACAGAAGATCGGCGACCAGTTGGCCGAGCCGCTGCTGATC
AACACCGCGCTCTCGCGCGAGGAACGCCGCGAAAAGGTCCAGCAGATGATGCGCCAGGTCGGCCTGCGGCCG
GAGCACTACCAGCGCTACCCGCACATGTTCTCCGGCGGCCAGCGCCAGCGCATCGCCCTGGCCCGGGCGATG
ATGCTGCAACCCAAGGTGCTGGTGGCGGACGAGCCGACCTCGGCCCTCGACGTGTCGATCCAGGCCCAGGTA
CTGAACCTGTTCATGGACCTGCAGCAGCAGTTCCGCACCGCCTACGTGTTCATCTCGCACAACCTGGCGGTG
GTCCGCCACGTCGCCGACGACGTCCTGGTGATGTACCTCGGCCGACCGGCGGAGATGGGGCCGGCGGACAAG
CTCTACGAGAACCCGCTGCATCCCTATACCCGCGCGCTGCTCTCGGCGACCCCGGCGATCCACCCGGACCCG
ACGAAGCCGAAGATCCGCATCCAGGGCGAACTGCCGAACCCGCTGCACCCGCCGGAGGGTTGCGCCTTCCAC
AAGCGCTGCCCCTACGCCACCGAGCGCTGCCGCAGCGAGGTGCCCGAGCTGCGCCTGCTCGACCAGCGCCAG
GTGGCCTGCCACCACGCCGAGCAATTCCTCGGCTGA
Translation:
METVLTARDLTRHYEVSRGLFKGHAQVRALNGVSFELEAGKTLAVVGESGCGKSTLARALTLIEEPTSGSLK
IAGQEVKGASKDQRRQLRRDVQMVFQNPYASLNPRQKIGDQLAEPLLINTALSREERREKVQQMMRQVGLRP
EHYQRYPHMFSGGQRQRIALARAMMLQPKVLVADEPTSALDVSIQAQVLNLFMDLQQQFRTAYVFISHNLAV
VRHVADDVLVMYLGRPAEMGPADKLYENPLHPYTRALLSATPAIHPDPTKPKIRIQGELPNPLHPPEGCAFH
KRCPYATERCRSEVPELRLLDQRQVACHHAEQFLG*
AnnotationID:2197GeneID:2189
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 07:07:23
Gene Name:dppF
Confidence Code:3
GeneProduct:putative dipeptide transport system ATP-binding pr
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4608,COG0444,COG1124
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66503.1|AE016279_6 (AE016777) dipeptide ABC transporter, ATP-binding protein
           [Pseudomonas putida KT2440]
          Length = 322

 Score =  567 bits (1460), Expect = e-161
 Identities = 281/322 (87%), Positives = 301/322 (93%)

>emb|CAC35515.1| (AJ310184) DppF protein [Rhizobium leguminosarum bv. viciae]
          Length = 316

 Score =  396 bits (1018), Expect = e-110
 Identities = 203/316 (64%), Positives = 234/316 (74%), Gaps = 4/316 (1%)

>gb|AAC22837.1| (U32798) dipeptide ABC transporter, ATP-binding protein (dppF)
           [Haemophilus influenzae Rd]
          Length = 327

 Score =  379 bits (974), Expect = e-104
 Identities = 188/317 (59%), Positives = 238/317 (75%), Gaps = 1/317 (0%)






 
Structural Features:
COG4608, AppF, ABC-type oligopeptide transport system, 
ATPase component 
[Amino acid transport and metabolism]
CD-Length = 309 residues,  98.4% aligned
Score =  414 bits (1065), Expect = 2e-116
Identities = 163/306 (53%), Positives = 229/306 (74%), Gaps = 2/306 (0%)

COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, 
ATPase component 
[Amino acid transport and metabolism / 
Inorganic ion transport and metabolism]
CD-Length = 316 residues, 100.0% aligned
Score =  339 bits (870), Expect = 7e-94
Identities = 138/326 (42%), Positives = 207/326 (63%), Gaps = 20/326 (6%)

COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, 
ATPase component 
[Amino acid transport and metabolism / 
Inorganic ion transport and metabolism]
CD-Length = 252 residues,  98.8% aligned
Score =  295 bits (758), Expect = 8e-81
Identities = 125/260 (48%), Positives = 179/260 (68%), Gaps = 11/260 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4381




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21527




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31550




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2189_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2189
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3732
                           PA4506_tr
                           translation of PA4506
                           323
                           99.69
                           99.99
                           0
                           1659.0
     

     
     
114782
                           gb|AAG07894.1|AE004864_6
                           (AE004864) probable ATP-binding component of ABC dipeptide transporter [Pseudomonas aeruginosa PAO1]
                           323
                           99.69
                           99.99
                           0
                           1659.0
     

     
     
114783
                           gb|AAN66503.1|AE016279_6
                           (AE016777) dipeptide ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           323
                           86.99
                           93.18
                           1
                           1460.0
     

     
     
114784
                           gb|AAQ58776.1|
                           (AE016913) dipeptide transport system ATP-binding protein [Chromobacterium violaceum ATCC 12472]
                           323
                           73.68
                           86.06
                           0
                           1244.0
     

     
     
114785
                           emb|CAC35515.1|
                           (AJ310184) DppF protein [Rhizobium leguminosarum bv. viciae]
                           323
                           62.84
                           72.44
                           7
                           1016.0
     

     






      

          
GC ORFID: 45191How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4506Glimmer Score: 

          
Start: 4472294Stop: 4473265

          
Length: 972


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4506 translation of PA4506Homolog Bit Score 643.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5620 (ORF: BLASTX 567.0), psyr_15may02_Scaffold1_revised_gene234 (ORF: BLASTX 288.0), psyr_15may02_Scaffold4_revised_gene5460 (ORF: BLASTX 256.0), psyr_15may02_Scaffold1_revised_gene232 (ORF: BLASTX 227.0), psyr_15may02_Scaffold2_revised_gene3192 (ORF: BLASTX 220.0), t_PA4506 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAACCGTTCTGACCGCCCGTGATCTGACCCGTCACTACGAAGTCTCCCGCGGCCTGTTCAAGGGCCAT 
GCCCAGGTGCGCGCGCTGAACGGCGTATCGTTCGAACTGGAAGCCGGCAAGACCCTCGCCGTGGTCGGCGAG 
TCCGGCTGCGGCAAGTCGACCCTGGCGCGCGCCCTGACCCTGATCGAGGAACCCACCTCCGGCTCGCTGAAA 
ATCGCCGGGCAGGAGGTCAAGGGCGCCAGCAAGGACCAGCGCCGGCAGTTGCGCCGCGACGTGCAGATGGTC 
TTCCAGAACCCCTACGCCTCGCTCAATCCGCGACAGAAGATCGGCGACCAGTTGGCCGAGCCGCTGCTGATC 
AACACCGCGCTCTCGCGCGAGGAACGCCGCGAAAAGGTCCAGCAGATGATGCGCCAGGTCGGCCTGCGGCCG 
GAGCACTACCAGCGCTACCCGCACATGTTCTCCGGCGGCCAGCGCCAGCGCATCGCCCTGGCCCGGGCGATG 
ATGCTGCAACCCAAGGTGCTGGTGGCGGACGAGCCGACCTCGGCCCTCGACGTGTCGATCCAGGCCCAGGTA 
CTGAACCTGTTCATGGACCTGCAGCAGCAGTTCCGCACCGCCTACGTGTTCATCTCGCACAACCTGGCGGTG 
GTCCGCCACGTCGCCGACGACGTCCTGGTGATGTACCTCGGCCGACCGGCGGAGATGGGGCCGGCGGACAAG 
CTCTACGAGAACCCGCTGCATCCCTATACCCGCGCGCTGCTCTCGGCGACCCCGGCGATCCACCCGGACCCG 
ACGAAGCCGAAGATCCGCATCCAGGGCGAACTGCCGAACCCGCTGCACCCGCCGGAGGGTTGCGCCTTCCAC 
AAGCGCTGCCCCTACGCCACCGAGCGCTGCCGCAGCGAGGTGCCCGAGCTGCGCCTGCTCGACCAGCGCCAG 
GTGGCCTGCCACCACGCCGAGCAATTCCTCGGCTGA