ViewGene
Locus Name:
GeneID:
Location:

GeneID:2188
TrivialName: PA14_52610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52610
PAO1 Ortholog Locus:PA0902
Sequence Length:1005
Protein Length:334
Start: 4665899
Stop: 4664895
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04291.1|AE004524_8 (AE004524) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 332/334 (99%), Positives = 332/334 (99%)
Sequence:
GTGCCTGTCATCGACCTGCGCAGCGACACCGTCACCCAGCCCACCGCCGGCATGCGCGAAGCCATGGCCGCG
GCCGAACTGGGCGACGACGTCTATGGCGAGGACCCCACGGTCAACCGCCTGGAGGCCGAACTGGCGGCGCGC
CTGGGCTTCGCCGCGGCGCTCTTCGTACCGACCGGGACCATGAGCAACCTGCTCGGATTGATGGCCCACTGC
GAGCGCGGCGACGAATACATCGTCGGCCAGCAGGCGCATACCTACAAATACGAGGGCGGCGGTGCCGCGGTG
CTGGGCTCGATCCAGCCGCAGCCGATCGACGGCGAGGCCGACGGATCGCTCGACCTGGACAAGGTCGCGGCG
GCGATCAAGGCCGACGACTTCCATTTCGCCAGGACCCGCCTGCTGGCCCTGGAAAACACCATGCAGGGCAAG
GTGCTGCCGCTCGACTACCTGGCCGCGGCGCGCGCCTTCACTCGCGCGCGTGGCCTGGCCCTGCACCTGGAT
GGCGCGCGCCTGTACAACGCGGCGGTGAAGCTGGGCGTAGACGCCAGCGAGATCACCCGGCACTTCGACTCG
GTGTCGGTGTGCCTGTCCAAGGGCCTCGGTGCGCCGGTGGGCTCGGTGCTTTGCGGCAGCGTCGAACTGATC
GGCAAGGCCCGTCGCTGGCGCAAGATGGTCGGCGGCGGGATGCGCCAGGCCGGCCTGCTGGCGGCTGCCGGC
CTGTACGCCCTCGACCACCAGGTGGCACGCCTGGCCGACGACCACGCCAACGCCGCGCGCCTGGGCGACGGG
CTGCGCGAACTGGGCTATGCGGTGGAGCCGGTGCAGACCAACATGGTCTACGTCGATGTCGGCGAGCGGGCG
GTCGCGCTGCGCGACTTCCTCGCCGAGCGCGAGGTGCGGATCAGCGCGGCGGCGCGTTTGCGCCTGGTCACC
CACCTGGACGTTTCCGCCGAGTCCATAGGACAAGTACTGGATGCCTTCGCGGCCTTTCGTCGCTCATAA
Translation:
MPVIDLRSDTVTQPTAGMREAMAAAELGDDVYGEDPTVNRLEAELAARLGFAAALFVPTGTMSNLLGLMAHC
ERGDEYIVGQQAHTYKYEGGGAAVLGSIQPQPIDGEADGSLDLDKVAAAIKADDFHFARTRLLALENTMQGK
VLPLDYLAAARAFTRARGLALHLDGARLYNAAVKLGVDASEITRHFDSVSVCLSKGLGAPVGSVLCGSVELI
GKARRWRKMVGGGMRQAGLLAAAGLYALDHQVARLADDHANAARLGDGLRELGYAVEPVQTNMVYVDVGERA
VALRDFLAEREVRISAAARLRLVTHLDVSAESIGQVLDAFAAFRRS*
AnnotationID:2196GeneID:2188
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 12:12:35
Gene Name:
Confidence Code:3
GeneProduct:possible threonine aldolase
Cell Localization:()
Synonyms:PA0902
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2008, KOG1368
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]. Score: 358, 9e-100
KOG1368, Threonine aldolase [Amino acid transport and metabolism]. Score: 333, 4e-92






   
Genomic Context:
Adjacent to arginine-ornithine catabolic locus 






   
Comment:


















    ReferenceID:14527




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16991




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA0902_CDS.cgi


    		




 
URL:

















    ReferenceID:21525




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2188
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3731
                           PA0902_tr
                           translation of PA0902
                           334
                           99.40
                           99.40
                           0
                           1658.0
     

     
     
114744
                           gb|AAG04291.1|AE004524_8
                           (AE004524) hypothetical protein PA0902 [Pseudomonas aeruginosa PAO1]
                           334
                           99.10
                           99.40
                           0
                           1655.0
     

     
     
114745
                           gb|AAC46016.1|
                           (AF011922) L-allo-threonine aldolase [Pseudomonas aeruginosa]
                           334
                           99.10
                           99.40
                           0
                           1655.0
     

     
     
114746
                           gb|AAO55360.1|
                           (AE016862) threonine aldolase, low-specificity [Pseudomonas syringae pv. tomato str. DC3000]
                           334
                           78.14
                           85.62
                           0
                           1301.0
     

     
     
114748
                           gb|AAL19870.1|
                           (AE008737) L-allo-threonine aldolase [Salmonella typhimurium LT2]
                           335
                           62.68
                           74.32
                           3
                           1022.0
     

     






      

          
GC ORFID: 45190How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0902Glimmer Score: 

          
Start: 288008Stop: 289012

          
Length: 1005


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0902 translation of PA0902Homolog Bit Score 643.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7823 (ORF: BLASTX 516.0), t_PA0902 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCTGTCATCGACCTGCGCAGCGACACCGTCACCCAGCCCACCGCCGGCATGCGCGAAGCCATGGCCGCG 
GCCGAACTGGGCGACGACGTCTATGGCGAGGACCCCACGGTCAACCGCCTGGAGGCCGAACTGGCGGCGCGC 
CTGGGCTTCGCCGCGGCGCTCTTCGTACCGACCGGGACCATGAGCAACCTGCTCGGATTGATGGCCCACTGC 
GAGCGCGGCGACGAATACATCGTCGGCCAGCAGGCGCATACCTACAAATACGAGGGCGGCGGTGCCGCGGTG 
CTGGGCTCGATCCAGCCGCAGCCGATCGACGGCGAGGCCGACGGATCGCTCGACCTGGACAAGGTCGCGGCG 
GCGATCAAGGCCGACGACTTCCATTTCGCCAGGACCCGCCTGCTGGCCCTGGAAAACACCATGCAGGGCAAG 
GTGCTGCCGCTCGACTACCTGGCCGCGGCGCGCGCCTTCACTCGCGCGCGTGGCCTGGCCCTGCACCTGGAT 
GGCGCGCGCCTGTACAACGCGGCGGTGAAGCTGGGCGTAGACGCCAGCGAGATCACCCGGCACTTCGACTCG 
GTGTCGGTGTGCCTGTCCAAGGGCCTCGGTGCGCCGGTGGGCTCGGTGCTTTGCGGCAGCGTCGAACTGATC 
GGCAAGGCCCGTCGCTGGCGCAAGATGGTCGGCGGCGGGATGCGCCAGGCCGGCCTGCTGGCGGCTGCCGGC 
CTGTACGCCCTCGACCACCAGGTGGCACGCCTGGCCGACGACCACGCCAACGCCGCGCGCCTGGGCGACGGG 
CTGCGCGAACTGGGCTATGCGGTGGAGCCGGTGCAGACCAACATGGTCTACGTCGATGTCGGCGAGCGGGCG 
GTCGCGCTGCGCGACTTCCTCGCCGAGCGCGAGGTGCGGATCAGCGCGGCGGCGCGTTTGCGCCTGGTCACC 
CACCTGGACGTTTCCGCCGAGTCCATAGGACAAGTACTGGATGCCTTCGCGGCCTTTCGTCGCTCATAA