ViewGene
Locus Name:
GeneID:
Location:

GeneID:2187
TrivialName: PA14_56110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56110
PAO1 Ortholog Locus:PA4319
Sequence Length:981
Protein Length:326
Start: 5010943
Stop: 5011923
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07707.1|AE004848_6 (AE004848) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 324/326 (99%), Positives = 324/326 (99%)
Sequence:
ATGAAACAGAGCCTCTTCGAACAGCGCCACCAGGCCGCCTGGCAACGCTTCGACAAACGCCTCGCCTTCCTC
GAGAAAGGCAAGAAGCTGGAAGGCTCCAGCGACGACTTCGCCGCCGATTACCGGCGCCTCTGCCAGCAACTA
GCGCTGGCCCAGGAGCGCGGCTACAGCAGTCACCTGATCGACCAGTTGCAGCAACTGGCGATGCGCGGCCAC
CAGCAGTTCTACCGGCACCGCAGCCAGCTCGGCAGCCGCATCCTCGGCTTCCTGCTCGCCGGCCTGCCGCGC
CTGGTCCGCGAGGAGTGGCGCAGCATCGCCGTGGCCAGCCTGCTGTTCTACGGCAGCGCCCTGCTCATGGGG
CTGCTGGTCTATCACTTTCCCGACCTGATCTACAGCGTGGTCAGCCCGGACAAGGTCAGCGAGATGGAGTCT
ATGTACGCCCCGGAAACCACCCGCCTGGGTCCGTTGGGGGCACGCGACACCAGCGACGACTGGGAAATGTTC
GGCTTCTACATCATGAACAACATCGGCATCGCCTTTCAGACCTTCGCCAGCGGCGTGCTGCTGGGACTCGGC
AGCCTGTTCTTCCTGCTGTTCAATGGCCTGATGATCGGTTCGGTGGCCGGCCACCTGACGCAGATCGGCTAC
GTGCAGACCTTCTGGCCCTTCGTCATCGGCCACGGCGCGTTCGAACTGACCGCCATCACCTTCGCCGGCGCC
GCCGGCCTCAAGCTCGGCTGGGCGCTGCTCGCGCCAGGTCGCCTGACCCGCGGCGAAGCCCTGCGGCTGGCC
GCCCGGCGCAGCGTGCAACTGATCGCCGGGGTGATCGTGCTGTTGCTGCTGGCGGCCTTCACCGAGGCCTAT
TGGTCTTCCATCAGTCATTTCGAGCCGCGGGTGAAGTACGCGGTCGGCGCGGTCCTCTGGCTGCTGGTCGGC
AGCTACTTCCTGTTCGCCGGACGGAGCCGCCATGCGCCTGACTGA
Translation:
MKQSLFEQRHQAAWQRFDKRLAFLEKGKKLEGSSDDFAADYRRLCQQLALAQERGYSSHLIDQLQQLAMRGH
QQFYRHRSQLGSRILGFLLAGLPRLVREEWRSIAVASLLFYGSALLMGLLVYHFPDLIYSVVSPDKVSEMES
MYAPETTRLGPLGARDTSDDWEMFGFYIMNNIGIAFQTFASGVLLGLGSLFFLLFNGLMIGSVAGHLTQIGY
VQTFWPFVIGHGAFELTAITFAGAAGLKLGWALLAPGRLTRGEALRLAARRSVQLIAGVIVLLLLAAFTEAY
WSSISHFEPRVKYAVGAVLWLLVGSYFLFAGRSRHAPD*
AnnotationID:2195GeneID:2187
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 13:01:43
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA4319
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1300
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57769.1| (AE016871) integral membrane protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 326

 Score =  452 bits (1162), Expect = e-126
 Identities = 226/326 (69%), Positives = 259/326 (79%)








 
Structural Features:
COG1300, SpoIIM, Uncharacterized membrane protein
CD-Length = 207 residues, 100.0% aligned
Score =  161 bits (409), Expect = 9e-41
Identities = 86/214 (40%), Positives = 115/214 (53%), Gaps = 7/214 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4377




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21523




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36676




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2187_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2187
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3730
                           PA4319_tr
                           translation of PA4319
                           326
                           99.38
                           99.38
                           0
                           1661.0
     

     
     
114742
                           gb|AAG07707.1|AE004848_6
                           (AE004848) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           326
                           99.38
                           99.38
                           0
                           1661.0
     

     
     
114743
                           gb|AAO57769.1|
                           (AE016871) integral membrane protein [Pseudomonas syringae pv. tomato str. DC3000]
                           326
                           69.32
                           79.44
                           0
                           1162.0
     

     






      

          
GC ORFID: 45189How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4319Glimmer Score: 

          
Start: 4274619Stop: 4275599

          
Length: 981


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4319 translation of PA4319Homolog Bit Score 644.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene1947 (ORF: BLASTX 450.0), t_PA4319 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACAGAGCCTCTTCGAACAGCGCCACCAGGCCGCCTGGCAACGCTTCGACAAACGCCTCGCCTTCCTC 
GAGAAAGGCAAGAAGCTGGAAGGCTCCAGCGACGACTTCGCCGCCGATTACCGGCGCCTCTGCCAGCAACTA 
GCGCTGGCCCAGGAGCGCGGCTACAGCAGTCACCTGATCGACCAGTTGCAGCAACTGGCGATGCGCGGCCAC 
CAGCAGTTCTACCGGCACCGCAGCCAGCTCGGCAGCCGCATCCTCGGCTTCCTGCTCGCCGGCCTGCCGCGC 
CTGGTCCGCGAGGAGTGGCGCAGCATCGCCGTGGCCAGCCTGCTGTTCTACGGCAGCGCCCTGCTCATGGGG 
CTGCTGGTCTATCACTTTCCCGACCTGATCTACAGCGTGGTCAGCCCGGACAAGGTCAGCGAGATGGAGTCT 
ATGTACGCCCCGGAAACCACCCGCCTGGGTCCGTTGGGGGCACGCGACACCAGCGACGACTGGGAAATGTTC 
GGCTTCTACATCATGAACAACATCGGCATCGCCTTTCAGACCTTCGCCAGCGGCGTGCTGCTGGGACTCGGC 
AGCCTGTTCTTCCTGCTGTTCAATGGCCTGATGATCGGTTCGGTGGCCGGCCACCTGACGCAGATCGGCTAC 
GTGCAGACCTTCTGGCCCTTCGTCATCGGCCACGGCGCGTTCGAACTGACCGCCATCACCTTCGCCGGCGCC 
GCCGGCCTCAAGCTCGGCTGGGCGCTGCTCGCGCCAGGTCGCCTGACCCGCGGCGAAGCCCTGCGGCTGGCC 
GCCCGGCGCAGCGTGCAACTGATCGCCGGGGTGATCGTGCTGTTGCTGCTGGCGGCCTTCACCGAGGCCTAT 
TGGTCTTCCATCAGTCATTTCGAGCCGCGGGTGAAGTACGCGGTCGGCGCGGTCCTCTGGCTGCTGGTCGGC 
AGCTACTTCCTGTTCGCCGGACGGAGCCGCCATGCGCCTGACTGA