|
|
|
Modification Date/Time: | 2006-04-06 13:01:23 |
|
|
|
|
|
|
|
|
|
|
|
|
Missense Discrepancy: | FALSE |
|
Comments: Homology: gb|AAG07511.1|AE004829_1 (AE004829) homoprotocatechuate 2,3-dioxygenase [Pseudomonas aeruginosa PAO1]
Identities = 307/307 (100%), Positives = 307/307 (100%)
|
Sequence:
ATGGGCAAAGTCGCTCTGGCTGCCAAGATCACCCACGTACCCTCGCTGTACCTGTCCGAGCTGCCCGGCCCG
CGCCACGGCTGCCGCCAGCCGGCGATCGACGGGCACCGCGAGATCGGCCGGCGCTGCCGCGAACTGGGGGTC
GACACCATCGTGGTGTTCGACACCCACTGGCTGGTCAACGCCGGCTACCACATCAACTGCGCGCCGCACTTC
GAGGGGCTCTACACCAGCAACGAGCTGCCGCACTTCATCGCCAACATGGAGTACGGCTTCCCCGGCAACCCG
GAGCTGGGCCGCATCCTCGCCGAAGGCTGCAACGCGCTCGGCGTGGAGACCCTGGCCCACGACGCCACTACC
CTCGGCCCGGAGTACGGCACCCTGGTACCGATGCGCTACATGAACCAGGACCGCCACTTCAAGGTGGTCTCG
GTCTCCGCCCTGTGCACCGTGCATTACCTGAACGACAGCGCGCGCCTGGGCTGGGCCATGCGCAAGGCGGTG
GAAGAGCACTACGACGGCACGGTGGCGTTCCTCGCCAGCGGCTCACTGTCCCACCGCTTCGCCCAGAACGGC
CAGGCGCCGGACTTCTCCGACCGCATCTGGAGCCCGTTCCTCGAGGTCCTCGACCATGAAGTCGTGCAGATG
TGGCAGGAAGGCCGCTGGGCGGAATTCTGCGGGATGCTCCCGGAGTACGCCTCCAAGGGCCATGGCGAAGGC
TTCATGCACGACACCGCGATGCTCCTCGGCGCCCTCGGCTGGTCGGCCTACGACGGCAAGGCGGAGGTGGTG
ACGCCCTACTTCGGCTCCTCCGGCACCGGGCAGATCAACGCGGTATTCCCGGTCACCGCCCAGGACGGCTCG
GCGATTCCCGCCGCCCAAGCCGGCAACCCGGCCGGCGCCAGTTGCGCCAGCCGCCTCTGA |
Translation:
MGKVALAAKITHVPSLYLSELPGPRHGCRQPAIDGHREIGRRCRELGVDTIVVFDTHWLVNAGYHINCAPHF
EGLYTSNELPHFIANMEYGFPGNPELGRILAEGCNALGVETLAHDATTLGPEYGTLVPMRYMNQDRHFKVVS
VSALCTVHYLNDSARLGWAMRKAVEEHYDGTVAFLASGSLSHRFAQNGQAPDFSDRIWSPFLEVLDHEVVQM
WQEGRWAEFCGMLPEYASKGHGEGFMHDTAMLLGALGWSAYDGKAEVVTPYFGSSGTGQINAVFPVTAQDGS
AIPAAQAGNPAGASCASRL* |
AnnotationID:2194 | GeneID:2186 |
|
Modification Date/Time: |
2005-03-30 13:01:09 |
|
|
|
GeneProduct: | homoprotocatechuate 2,3-dioxygenase |
|
|
|
Cell Localization Confidence Code: | 5 |
|
|
Functional Category: | (5) Carbon compound catabolism |
|
Alternate Gene Product Name: | homoprotocatechuate dyoxygenase |
|
Functional Category Confidence Code: | 5 |
|
|
Secondary Functional Category(ies): | |
|
|
|
|
Homology: | >emb|CAE31237.1| (BX640439) homoprotocatechuate 2,3-dioxygenase [Bordetella
bronchiseptica]
Length = 289
Score = 422 bits (1086), Expect = e-117
Identities = 198/283 (69%), Positives = 227/283 (80%)
>gb|AAL28115.1|AF433158_1 (AF433158) homoprotocatechuate 2,3-dioxygenase [Pseudomonas sp.
DJ-12]
Length = 287
Score = 403 bits (1036), Expect = e-112
Identities = 188/283 (66%), Positives = 221/283 (78%)
>gb|AAO17180.1| (AF346500) HpaD [Photorhabdus luminescens]
Length = 292
Score = 395 bits (1015), Expect = e-109
Identities = 190/282 (67%), Positives = 221/282 (78%), Gaps = 1/282 (0%)
|
|
Structural Features: | pfam02900, LigB, Catalytic LigB subunit of aromatic ring-opening dioxygenase.
CD-Length = 270 residues, 100.0% aligned
Score = 204 bits (520), Expect = 1e-53
Identities = 81/281 (28%), Positives = 112/281 (39%), Gaps = 16/281 (5%) |
|
|
|
|
|