ViewGene
Locus Name:
GeneID:
Location:

GeneID:2185
TrivialName: PA14_22860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22860
PAO1 Ortholog Locus:PA3197
Sequence Length:993
Protein Length:330
Start: 1983607
Stop: 1984599
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06585.1|AE004743_8 (AE004743) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 330/332 (99%), Positives = 330/332 (99%), Gaps = 2/332 (0%)
Sequence:
ATGAACCTGTCCGATCCCCACGAACTCGCCACCCTGCTCGAAGGCATCCTCCTCGCGGCCGGCAAGCCGCTG
TCGCTGGAGCGCCTGGCCGAGCTGTTCGACGAGGCCGAGCGGCCGGAACCGGGGCAGTTCCGCGACGCCCTG
GCGATCCTCGCGCTGTCCTGCGCGGGGCGTTCCTTCGAGCTGAAGGAAGTCGCGTCCGGGTATCGCCTGCAG
ATTCGCGAGCGTTTCTCGCCGTGGGTCGGCCGCCTCTGGGAGGAGCGTCCGCAGCGCTATTCGCGCGCGCTC
CTGGAAACCCTGGTGCTGATCGCCTACCGCCAGCCGATCACCCGTGGCGAGATCGAGGAGATCCGCGGCGTG
GCGGTGAACACCCAGATCGTCAAGACGCTGATGGAGCGGGAGTGGATCCGCATCGTTGGCTACCGCGAGGTG
CCGGGGCGCCCGGCGATGCTGGCGACCACCAAGGCGTTCCTCGATTATTTCAACCTGAAGAGCCTCGACGAG
CTGCCGCCGCTGTCGGCGCTGCGCGAGATGGAGCCCGAGCCGGAACCGCCGGTCGAAGTGGCGGCGCAGCCG
CCGCGCGACGATCTCGACGAGGATGCGATTCCTGCCTCGATCCAGGCCCTGGCCGATCGCGCCATCGCCGAG
GCCGGGGAAAGCCTCGAGGAGATCGAGGGGGAGGCCGGCGAGCCGGAGAAGCCGCGCGAGGAAACCAGCTTC
CGCAGCCTGCTGCTGGAACTGGACGAGATGGAGCAGGGCCTGAAGACCGACTTCGACGACCTGCTCGACCCT
CCGGAGCCCTCGGAGCAGGGCGACGAGTCCGCCGAGCCAGCGGCTGGGCCGATTCCCGTGGTCGCGGAGCAA
GCCGTCGAGCCTGCCGTCGCGGAGGCTGTCGCGGGCGCCGATCCCGATGACGAGGAGCGCGCCCTGGCGGAG
GCCATGCGCGAGGAGCGCGAGGCACTGGACGCCGACGACGACTGGCCGCGCCGCTGA
Translation:
MNLSDPHELATLLEGILLAAGKPLSLERLAELFDEAERPEPGQFRDALAILALSCAGRSFELKEVASGYRLQ
IRERFSPWVGRLWEERPQRYSRALLETLVLIAYRQPITRGEIEEIRGVAVNTQIVKTLMEREWIRIVGYREV
PGRPAMLATTKAFLDYFNLKSLDELPPLSALREMEPEPEPPVEVAAQPPRDDLDEDAIPASIQALADRAIAE
AGESLEEIEGEAGEPEKPREETSFRSLLLELDEMEQGLKTDFDDLLDPPEPSEQGDESAEPAAGPIPVVAEQ
AVEPAVAEAVAGADPDDEERALAEAMREEREALDADDDWPRR*
AnnotationID:2193GeneID:2185
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 07:07:07
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA3197
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04079,COG1386
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam04079, DUF387, Putative transcriptional regulators (Ypuh-like).
CD-Length = 160 residues, 100.0% aligned
Score =  168 bits (426), Expect = 1e-42
Identities = 83/165 (50%), Positives = 105/165 (63%), Gaps = 8/165 (4%)

COG1386, Predicted transcriptional regulator containing 
the HTH domain [Transcription]
CD-Length = 184 residues,  96.2% aligned
Score =  165 bits (420), Expect = 5e-42
Identities = 89/181 (49%), Positives = 117/181 (64%), Gaps = 5/181 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4373




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21519




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32347




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2185_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2185
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3728
                           PA3197_tr
                           translation of PA3197
                           332
                           99.39
                           99.39
                           2
                           1662.0
     

     
     
114711
                           gb|AAG06585.1|AE004743_8
                           (AE004743) hypothetical protein PA3197 [Pseudomonas aeruginosa PAO1]
                           332
                           99.39
                           99.39
                           2
                           1662.0
     

     
     
114712
                           gb|AAO55333.1|
                           (AE016862) conserved hypothetical protein TIGR00281 [Pseudomonas syringae pv. tomato str. DC3000]
                           331
                           56.79
                           66.16
                           75
                           929.0
     

     
     
114713
                           gb|AAN70071.1|AE016647_1
                           (AE016790) conserved hypothetical protein TIGR00281 [Pseudomonas putida KT2440]
                           353
                           51.84
                           61.47
                           99
                           913.0
     

     
     
114718
                           gb|AAO90574.1|
                           (AE016963) conserved hypothetical protein TIGR00281 [Coxiella burnetii RSA 493]
                           330
                           33.93
                           46.36
                           121
                           495.0
     

     






      

          
GC ORFID: 45187How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3197Glimmer Score: 

          
Start: 2970324Stop: 2969332

          
Length: 993


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3197 translation of PA3197Homolog Bit Score 644.0

          
Other Homologs:  t_PA3197 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGTCCGATCCCCACGAACTCGCCACCCTGCTCGAAGGCATCCTCCTCGCGGCCGGCAAGCCGCTG 
TCGCTGGAGCGCCTGGCCGAGCTGTTCGACGAGGCCGAGCGGCCGGAACCGGGGCAGTTCCGCGACGCCCTG 
GCGATCCTCGCGCTGTCCTGCGCGGGGCGTTCCTTCGAGCTGAAGGAAGTCGCGTCCGGGTATCGCCTGCAG 
ATTCGCGAGCGTTTCTCGCCGTGGGTCGGCCGCCTCTGGGAGGAGCGTCCGCAGCGCTATTCGCGCGCGCTC 
CTGGAAACCCTGGTGCTGATCGCCTACCGCCAGCCGATCACCCGTGGCGAGATCGAGGAGATCCGCGGCGTG 
GCGGTGAACACCCAGATCGTCAAGACGCTGATGGAGCGGGAGTGGATCCGCATCGTTGGCTACCGCGAGGTG 
CCGGGGCGCCCGGCGATGCTGGCGACCACCAAGGCGTTCCTCGATTATTTCAACCTGAAGAGCCTCGACGAG 
CTGCCGCCGCTGTCGGCGCTGCGCGAGATGGAGCCCGAGCCGGAACCGCCGGTCGAAGTGGCGGCGCAGCCG 
CCGCGCGACGATCTCGACGAGGATGCGATTCCTGCCTCGATCCAGGCCCTGGCCGATCGCGCCATCGCCGAG 
GCCGGGGAAAGCCTCGAGGAGATCGAGGGGGAGGCCGGCGAGCCGGAGAAGCCGCGCGAGGAAACCAGCTTC 
CGCAGCCTGCTGCTGGAACTGGACGAGATGGAGCAGGGCCTGAAGACCGACTTCGACGACCTGCTCGACCCT 
CCGGAGCCCTCGGAGCAGGGCGACGAGTCCGCCGAGCCAGCGGCTGGGCCGATTCCCGTGGTCGCGGAGCAA 
GCCGTCGAGCCTGCCGTCGCGGAGGCTGTCGCGGGCGCCGATCCCGATGACGAGGAGCGCGCCCTGGCGGAG 
GCCATGCGCGAGGAGCGCGAGGCACTGGACGCCGACGACGACTGGCCGCGCCGCTGA