ViewGene
Locus Name:
GeneID:
Location:

GeneID:2183
TrivialName: PA14_38040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38040
PAO1 Ortholog Locus:PA2047
Sequence Length:990
Protein Length:329
Start: 3392910
Stop: 3393899
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05435.1|AE004631_4 (AE004631) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 329/329 (100%), Positives = 329/329 (100%)
Sequence:
ATGCCTGTCGCCGCGACGCGCGCTAGTCTTGGGAAGGTTTCCCCCGCGAGTCCCCGCATGAGCGAAAACACC
CCGCTTCTTTCCGTCGATCTCCCCGCCGAATTGCGCCAGCGCCAGAGCGAACTGGCGCAGTCGCTGCTCAGG
CATTGCCCCCGCGACGGTATCTACGGCACCGCCGTCGAACCCCTCGCCCTGATCCGCGCCGACGGCCCCACC
CTGCCGGCGCGCGGCATGCACAAACCTGCCCTGTGCATCATCGCCCAGGGCCGCAAGGAGGTGCAGTTGGCC
GAGGAACGCTATATCTACGATCCGTTGCACTACCTGGTGGTCTCGGTCACCCTGCCGCTGGCCGGCCAGGTG
ATCGACGCCTCGCCGGACGCGCCCTACCTCTGCGTCCGGCTGGATATCGACCCGGCGGAAATCACCCAGTTG
ATCTCCGACGCCGGGCCCATGGAAGTGGCCAGCCGGCGCGGCGACCGCGGCCTCTACGTCGACCGTATCGAC
GCCAGCCTGCTGGATGCGGTGCTGCGCCTGATCCATCTGCTGGACAGCCCGCGCGACATCCCGATGCTGGCG
CCGCTGATCCTCCGCGAGATTTTCTACCGGCTGCTGCGCAGCGGCCAGGGCCAGCGCCTGCACGAGATCGCC
ATCGCCGACAGCCAGGCCCACCGCATCACCCGCGCCATCGACTGGATCAACCAGAACTACGGCAAGCCGCTG
CGCATCGAGCAACTGGCCCAGGTGGTCAACCTCAGCCCCTCGACCCTGCACCACCGCTTCAAGGCCGTGACC
GCGATGAGCCCGTTGCAGTACCAGAAGCAGCTGCGCTTGCAGGAAGCACGCCGGCTGATCTTCAGCGAGGGC
CTGGAAGTGGCCGCCGCCGGCTACCGGGTCGGCTACGAAAGCCCGTCGCAGTTCAGCCGCGAGTACAGCCGG
CTGTTCGGCGCCCCGCCGCTGCGCGACCTGGCGCGGGCGCGCAACACCGCCTAG
Translation:
MPVAATRASLGKVSPASPRMSENTPLLSVDLPAELRQRQSELAQSLLRHCPRDGIYGTAVEPLALIRADGPT
LPARGMHKPALCIIAQGRKEVQLAEERYIYDPLHYLVVSVTLPLAGQVIDASPDAPYLCVRLDIDPAEITQL
ISDAGPMEVASRRGDRGLYVDRIDASLLDAVLRLIHLLDSPRDIPMLAPLILREIFYRLLRSGQGQRLHEIA
IADSQAHRITRAIDWINQNYGKPLRIEQLAQVVNLSPSTLHHRFKAVTAMSPLQYQKQLRLQEARRLIFSEG
LEVAAAGYRVGYESPSQFSREYSRLFGAPPLRDLARARNTA*
AnnotationID:2191GeneID:2183
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:01
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA2047
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06719
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67018.1|AE016330_7 (AE016779) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 306

 Score =  359 bits (922), Expect = 1e-98
 Identities = 183/295 (62%), Positives = 230/295 (77%)

>emb|CAE32909.1| (BX640444) putative araC-family transcriptional regulator
           [Bordetella bronchiseptica]
          Length = 324

 Score =  301 bits (772), Expect = 3e-81
 Identities = 163/292 (55%), Positives = 199/292 (68%), Gaps = 1/292 (0%)

>gb|AAM41948.1| (AE012380) transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 303

 Score =  254 bits (650), Expect = 4e-67
 Identities = 136/288 (47%), Positives = 180/288 (62%), Gaps = 1/288 (0%)








 
Structural Features:
pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus.
CD-Length = 156 residues, 100.0% aligned
Score =  186 bits (475), Expect = 2e-48
Identities = 87/156 (55%), Positives = 108/156 (69%), Gaps = 1/156 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4369




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21515




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32660




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2183_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2183
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3726
                           PA2047_tr
                           translation of PA2047
                           329
                           99.99
                           99.99
                           0
                           1662.0
     

     
     
114667
                           gb|AAG05435.1|AE004631_4
                           (AE004631) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           329
                           99.99
                           99.99
                           0
                           1662.0
     

     
     
114668
                           gb|AAN67018.1|AE016330_7
                           (AE016779) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           335
                           56.41
                           70.44
                           35
                           920.0
     

     
     
114669
                           emb|CAE32909.1|
                           (BX640444) putative araC-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           354
                           47.45
                           57.62
                           55
                           769.0
     

     
     
114670
                           emb|CAE36651.1|
                           (BX640427) putative araC-family transcriptional regulator [Bordetella parapertussis]
                           354
                           47.17
                           57.34
                           55
                           762.0
     

     






      

          
GC ORFID: 45185How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2047Glimmer Score: 

          
Start: 1561000Stop: 1560011

          
Length: 990


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2047 translation of PA2047Homolog Bit Score 644.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3957 (ORF: BLASTX 362.0), t_PA2047 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGTCGCCGCGACGCGCGCTAGTCTTGGGAAGGTTTCCCCCGCGAGTCCCCGCATGAGCGAAAACACC 
CCGCTTCTTTCCGTCGATCTCCCCGCCGAATTGCGCCAGCGCCAGAGCGAACTGGCGCAGTCGCTGCTCAGG 
CATTGCCCCCGCGACGGTATCTACGGCACCGCCGTCGAACCCCTCGCCCTGATCCGCGCCGACGGCCCCACC 
CTGCCGGCGCGCGGCATGCACAAACCTGCCCTGTGCATCATCGCCCAGGGCCGCAAGGAGGTGCAGTTGGCC 
GAGGAACGCTATATCTACGATCCGTTGCACTACCTGGTGGTCTCGGTCACCCTGCCGCTGGCCGGCCAGGTG 
ATCGACGCCTCGCCGGACGCGCCCTACCTCTGCGTCCGGCTGGATATCGACCCGGCGGAAATCACCCAGTTG 
ATCTCCGACGCCGGGCCCATGGAAGTGGCCAGCCGGCGCGGCGACCGCGGCCTCTACGTCGACCGTATCGAC 
GCCAGCCTGCTGGATGCGGTGCTGCGCCTGATCCATCTGCTGGACAGCCCGCGCGACATCCCGATGCTGGCG 
CCGCTGATCCTCCGCGAGATTTTCTACCGGCTGCTGCGCAGCGGCCAGGGCCAGCGCCTGCACGAGATCGCC 
ATCGCCGACAGCCAGGCCCACCGCATCACCCGCGCCATCGACTGGATCAACCAGAACTACGGCAAGCCGCTG 
CGCATCGAGCAACTGGCCCAGGTGGTCAACCTCAGCCCCTCGACCCTGCACCACCGCTTCAAGGCCGTGACC 
GCGATGAGCCCGTTGCAGTACCAGAAGCAGCTGCGCTTGCAGGAAGCACGCCGGCTGATCTTCAGCGAGGGC 
CTGGAAGTGGCCGCCGCCGGCTACCGGGTCGGCTACGAAAGCCCGTCGCAGTTCAGCCGCGAGTACAGCCGG 
CTGTTCGGCGCCCCGCCGCTGCGCGACCTGGCGCGGGCGCGCAACACCGCCTAG