ViewGene
Locus Name:
GeneID:
Location:

GeneID:2182
TrivialName: PA14_40830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40830
PAO1 Ortholog Locus:PA1833
Sequence Length:993
Protein Length:330
Start: 3643165
Stop: 3642173
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05222.1|AE004609_9 (AE004609) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 330/330 (100%), Positives = 330/330 (100%)
Sequence:
ATGGCTGTATTCAAGGCGTTGTGGGTGACGGAAGCGCCCCACGGCGTTTACGAAACGCAGGTGGTCGAGCGC
GATACCGGCGACCTGCCGGCGGGCGACGTACTGATCCGCGTGCAGTATTCCTCGCTGAACTACAAGGATGCG
CTGTCCGCCAGCGGCAACCGCGGGGTGACCCGCAAGTACCCGCATACCCCCGGCATCGATGCCGCCGGTGTG
GTCGCCGAGTCCTCGGTGGCCGAGTTCGCGGCCGGTGACGAGGTGATCGTCACCGGCTACGACCTGGGCATG
AACACCGCCGGCGGTTTCGGCCAGTACATCCGCGTGCCCGCGGCCTGGGTGATCAAGCGCCCGCAAGGCCTG
AGCCTGCGCGAGGCGATGATCCTCGGCACCGCCGGCCTGACCGCGGCGCTCTGCGTCGAAAAGCTGGAGCGC
AGCGGCCTGCGCCCCGACCATGGCTCGGTGCTGGTCACCGGCGCCAGCGGCGGGGTCGGCAGTATCGCCGTG
GAACTGCTGGCCAAGCTCGGCTACACCGTGGCGGCCGCCACCGGCAAGCTGGAGCAGGCCGAGTTCCTCAAC
CGCCTGGGGGCCAAGCAGATCCTCGATCGCGCCACCGTGGCCGATGGCGTCGACAAGCCGTTGCTCAAGGAA
CAGTGGGCCGGCGCGGTGGACACCGTCGGCGGCGACATCCTCTTCAACGTGGTCAAGTCGTTGCAGTACGGC
GGCAGCGTCGCCTGCTGCGGCCTGACCGCCGGCGCCGGCTTCAAGGCCTCGGTGCTGCCGTTCATCCTGCGC
GGGGTCAACCTGCTCGGGGTGGACTCGGTGGAGCTGCCGCTGGTGGTCAAGGCATCCATGTGGGACAAGCTG
TCGCTGCAATGGAAGCTCGACAACCTCGAAGAGGTGGCGCGCGAGATCGCCCTCGAAGAGCTGCCGGGGGCG
ATCAACCAGATCCTCGCCGGCAAGCTGGTCGGCCGGGTGCTGGTCAACCTCGGCTGA
Translation:
MAVFKALWVTEAPHGVYETQVVERDTGDLPAGDVLIRVQYSSLNYKDALSASGNRGVTRKYPHTPGIDAAGV
VAESSVAEFAAGDEVIVTGYDLGMNTAGGFGQYIRVPAAWVIKRPQGLSLREAMILGTAGLTAALCVEKLER
SGLRPDHGSVLVTGASGGVGSIAVELLAKLGYTVAAATGKLEQAEFLNRLGAKQILDRATVADGVDKPLLKE
QWAGAVDTVGGDILFNVVKSLQYGGSVACCGLTAGAGFKASVLPFILRGVNLLGVDSVELPLVVKASMWDKL
SLQWKLDNLEEVAREIALEELPGAINQILAGKLVGRVLVNLG*
AnnotationID:2190GeneID:2182
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 21:09:28
Gene Name:
Confidence Code:3
GeneProduct:putative alcohol dehydrogenase, zinc-containing
Cell Localization:()
Synonyms:yhfP
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0604,COG1064,pfam00107
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAP07793.1| (AE017000) Alcohol dehydrogenase [Bacillus cereus ATCC 14579]
          Length = 331

 Score =  356 bits (914), Expect = 9e-98
 Identities = 178/326 (54%), Positives = 234/326 (71%)

>gb|AAP24791.1| (AE017026) alcohol dehydrogenase, zinc-containing [Bacillus
           anthracis str. Ames]
          Length = 332

 Score =  351 bits (901), Expect = 3e-96
 Identities = 175/326 (53%), Positives = 231/326 (70%)

>emb|CAB12872.1| (Z99109) yhfP [Bacillus subtilis subsp. subtilis str. 168]
          Length = 330

 Score =  312 bits (800), Expect = 2e-84
 Identities = 160/305 (52%), Positives = 209/305 (68%), Gaps = 1/305 (0%)






 
Structural Features:
COG0604, Qor, NADPH:quinone reductase and related 
Zn-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 326 residues,  99.4% aligned
Score =  199 bits (507), Expect = 4e-52
Identities = 110/332 (33%), Positives = 158/332 (47%), Gaps = 16/332 (4%)

COG1064, AdhP, Zn-dependent alcohol dehydrogenases
CD-Length = 339 residues,  99.1% aligned
Score =  132 bits (333), Expect = 6e-32
Identities = 95/358 (26%), Positives = 157/358 (43%), Gaps = 52/358 (14%)

pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.
CD-Length = 341 residues,  97.1% aligned
Score =  115 bits (290), Expect = 5e-27
Identities = 96/337 (28%), Positives = 141/337 (41%), Gaps = 35/337 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4367




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21513




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37092




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2182_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2182
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3725
                           PA1833_tr
                           translation of PA1833
                           330
                           99.99
                           99.99
                           0
                           1661.0
     

     
     
114618
                           gb|AAG05222.1|AE004609_9
                           (AE004609) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           330
                           99.99
                           99.99
                           0
                           1661.0
     

     
     
114620
                           gb|AAR34101.1|
                           (AE017209) alcohol dehydrogenase, zinc-containing [Geobacter sulfurreducens PCA]
                           335
                           53.73
                           67.76
                           5
                           894.0
     

     
     
114619
                           gb|AAP07793.1|
                           (AE017000) Alcohol dehydrogenase [Bacillus cereus ATCC 14579]
                           332
                           53.61
                           70.48
                           3
                           910.0
     

     
     
114621
                           gb|AAP24791.1|
                           (AE017026) alcohol dehydrogenase, zinc-containing [Bacillus anthracis str. Ames]
                           332
                           52.71
                           69.57
                           2
                           895.0
     

     






      

          
GC ORFID: 45184How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1833Glimmer Score: 

          
Start: 1310745Stop: 1311737

          
Length: 993


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1833 translation of PA1833Homolog Bit Score 644.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7425 (ORF: BLASTX 280.0), t_PA1833 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGTATTCAAGGCGTTGTGGGTGACGGAAGCGCCCCACGGCGTTTACGAAACGCAGGTGGTCGAGCGC 
GATACCGGCGACCTGCCGGCGGGCGACGTACTGATCCGCGTGCAGTATTCCTCGCTGAACTACAAGGATGCG 
CTGTCCGCCAGCGGCAACCGCGGGGTGACCCGCAAGTACCCGCATACCCCCGGCATCGATGCCGCCGGTGTG 
GTCGCCGAGTCCTCGGTGGCCGAGTTCGCGGCCGGTGACGAGGTGATCGTCACCGGCTACGACCTGGGCATG 
AACACCGCCGGCGGTTTCGGCCAGTACATCCGCGTGCCCGCGGCCTGGGTGATCAAGCGCCCGCAAGGCCTG 
AGCCTGCGCGAGGCGATGATCCTCGGCACCGCCGGCCTGACCGCGGCGCTCTGCGTCGAAAAGCTGGAGCGC 
AGCGGCCTGCGCCCCGACCATGGCTCGGTGCTGGTCACCGGCGCCAGCGGCGGGGTCGGCAGTATCGCCGTG 
GAACTGCTGGCCAAGCTCGGCTACACCGTGGCGGCCGCCACCGGCAAGCTGGAGCAGGCCGAGTTCCTCAAC 
CGCCTGGGGGCCAAGCAGATCCTCGATCGCGCCACCGTGGCCGATGGCGTCGACAAGCCGTTGCTCAAGGAA 
CAGTGGGCCGGCGCGGTGGACACCGTCGGCGGCGACATCCTCTTCAACGTGGTCAAGTCGTTGCAGTACGGC 
GGCAGCGTCGCCTGCTGCGGCCTGACCGCCGGCGCCGGCTTCAAGGCCTCGGTGCTGCCGTTCATCCTGCGC 
GGGGTCAACCTGCTCGGGGTGGACTCGGTGGAGCTGCCGCTGGTGGTCAAGGCATCCATGTGGGACAAGCTG 
TCGCTGCAATGGAAGCTCGACAACCTCGAAGAGGTGGCGCGCGAGATCGCCCTCGAAGAGCTGCCGGGGGCG 
ATCAACCAGATCCTCGCCGGCAAGCTGGTCGGCCGGGTGCTGGTCAACCTCGGCTGA