ViewGene

Locus Name:
GeneID:
Location:

GeneID:2181
TrivialName: PA14_48620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48620
PAO1 Ortholog Locus:PA1213
Sequence Length:960
Protein Length:319
Start: 4324016
Stop: 4324975
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04602.1|AE004551_6 (AE004551) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 319/319 (100%), Positives = 319/319 (100%)
Sequence:
ATGACAACCATCCATCGTCGCCCCGCGCCCTGGCGGGGCAACGCGGTGTTCTGCGCTTCGGCCGCTTTCGCC
GCCGGCCTGGAAACGCTGTTCGCGCGCCTGCTGGAGCGGCGTCCCGCCGATAGCGCGGAGGCTCTCCTGCGC
CAGCGCCTGCATCACGAACTGGAGCACGGCAGCGGCGTGCTGCTGCACGATTCCGCGCTGCTGCGCGGACTC
GCCGAGGACGAATTCCAGCGGGTGTTCCGCGCATTCTGCCAATGGCTGGGACGCACCGTGGCGATCAACCGC
AACGGCGAGTACCTCAAGGAAGTGCGCGACCTCGGTCTGCGCGACGCCCGCGACGCGCCGCAGCGCGGCCAC
CTGACCAGTCAGGAACTGGCCTTCCACTCCGATCGCGCCGACCTCACCGTGCTCGCCTGCTGGTCGCCGGCA
CGCCGGGGCGGCGCCTTCCGCATCCGTTCCTCGGCCGACGTCCTCGCCACCCTGGAAGCCGCCAATCCGGCC
TGGCTGCCCCTGCTCGGCCAACCGATCCCCCACGACCTGCGCGACGAAGGCGACGCCGACTACGCGCTGGTG
CCGCTGCTCACGGAAACCCCACGGACCTTCGTCTTGCGCTATATCCGCAAGTTCAACGAATCGGTGACGCGC
CACGGGCTAAGCCTCGCCCCGCAGGTGCGAAGCATGCTCGACGGCCTGGACGAGGCGATCGAACGCGCCGAC
GGCTATGCCGAACTGGACTTCAGCAAGGGCATGCTGGTGCTGGTGAACAACCACACCACCCTGCACGCGCGC
ACCGAGTTCAGCGACGACGAGCGGCAGCGCCGCTGCCTGCTGCGCTGCTGGCTGAGCAGCGAGTTCACCCGC
GAACTGCCGGAAAGCTTCCTGCCGCTGTTCCACCAGGTAGCCGCCGGCAGCCTGCGCGGCGGCATCCGTCCC
CTCGCCCAGGAGCCCCGCCCGTGA
Translation:
MTTIHRRPAPWRGNAVFCASAAFAAGLETLFARLLERRPADSAEALLRQRLHHELEHGSGVLLHDSALLRGL
AEDEFQRVFRAFCQWLGRTVAINRNGEYLKEVRDLGLRDARDAPQRGHLTSQELAFHSDRADLTVLACWSPA
RRGGAFRIRSSADVLATLEAANPAWLPLLGQPIPHDLRDEGDADYALVPLLTETPRTFVLRYIRKFNESVTR
HGLSLAPQVRSMLDGLDEAIERADGYAELDFSKGMLVLVNNHTTLHARTEFSDDERQRRCLLRCWLSSEFTR
ELPESFLPLFHQVAAGSLRGGIRPLAQEPRP*
AnnotationID:2189GeneID:2181
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 20:08:53
Gene Name:
Confidence Code:3
GeneProduct:putative clavaminic acid synthetase
Cell Localization:()
Synonyms:PA1213
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00250
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
cd00250, CAS_like, Clavaminic acid synthetase (CAS) -like
CD-Length = 262 residues, 100.0% aligned
Score =  162 bits (411), Expect = 5e-41
Identities = 69/266 (25%), Positives = 95/266 (35%), Gaps = 12/266 (4%)
Genomic Context:
Comment:
ReferenceID:4365
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21511
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36492
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2181_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2181

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3724 PA1213_tr translation of PA1213 319 99.99 99.99 0 1661.0
114617 gb|AAG04602.1|AE004551_6 (AE004551) hypothetical protein PA1213 [Pseudomonas aeruginosa PAO1] 319 99.99 99.99 0 1661.0
GC ORFID: 45183How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1213Glimmer Score:
Start: 629892Stop: 628933
Length: 960
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1213 translation of PA1213Homolog Bit Score 644.0
Other Homologs: t_PA1213 (ORF: GLIMMER)
GC ORF Sequence
ATGACAACCATCCATCGTCGCCCCGCGCCCTGGCGGGGCAACGCGGTGTTCTGCGCTTCGGCCGCTTTCGCC
GCCGGCCTGGAAACGCTGTTCGCGCGCCTGCTGGAGCGGCGTCCCGCCGATAGCGCGGAGGCTCTCCTGCGC
CAGCGCCTGCATCACGAACTGGAGCACGGCAGCGGCGTGCTGCTGCACGATTCCGCGCTGCTGCGCGGACTC
GCCGAGGACGAATTCCAGCGGGTGTTCCGCGCATTCTGCCAATGGCTGGGACGCACCGTGGCGATCAACCGC
AACGGCGAGTACCTCAAGGAAGTGCGCGACCTCGGTCTGCGCGACGCCCGCGACGCGCCGCAGCGCGGCCAC
CTGACCAGTCAGGAACTGGCCTTCCACTCCGATCGCGCCGACCTCACCGTGCTCGCCTGCTGGTCGCCGGCA
CGCCGGGGCGGCGCCTTCCGCATCCGTTCCTCGGCCGACGTCCTCGCCACCCTGGAAGCCGCCAATCCGGCC
TGGCTGCCCCTGCTCGGCCAACCGATCCCCCACGACCTGCGCGACGAAGGCGACGCCGACTACGCGCTGGTG
CCGCTGCTCACGGAAACCCCACGGACCTTCGTCTTGCGCTATATCCGCAAGTTCAACGAATCGGTGACGCGC
CACGGGCTAAGCCTCGCCCCGCAGGTGCGAAGCATGCTCGACGGCCTGGACGAGGCGATCGAACGCGCCGAC
GGCTATGCCGAACTGGACTTCAGCAAGGGCATGCTGGTGCTGGTGAACAACCACACCACCCTGCACGCGCGC
ACCGAGTTCAGCGACGACGAGCGGCAGCGCCGCTGCCTGCTGCGCTGCTGGCTGAGCAGCGAGTTCACCCGC
GAACTGCCGGAAAGCTTCCTGCCGCTGTTCCACCAGGTAGCCGCCGGCAGCCTGCGCGGCGGCATCCGTCCC
CTCGCCCAGGAGCCCCGCCCGTGA