ViewGene
Locus Name:
GeneID:
Location:

GeneID:2180
TrivialName: PA14_06480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06480
PAO1 Ortholog Locus:PA0496
Sequence Length:978
Protein Length:325
Start: 568039
Stop: 569016
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03885.1|AE004486_14 (AE004486) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 324/325 (99%), Positives = 324/325 (99%)
Sequence:
ATGTCGATTAAGGTGCTCAAGCCCGGCCTTGCCACCTCGGTGCAGGACGCCGGCCGCGAAGGCCACTATCAC
CTGGGTATCCCGCCGTCCGGCGCGCTCGACCAGTACGCCCTGCGCGCGGCCAACCTGCTGGTGGGCAACGCA
CCGACCGCCGCCGTGCTGGAGTGCGCGCTGCTGGGTCCGCAGCTGGAGTTCCAGCGCGACGCCCTGGTGGCC
GTGTGCGGGGCGCGCATGACGCCTCGCCTGGAGGGCGCGGAGATGCCGCTGGATACTTCCTTCCGGGTTCGC
GCCGGCCAGGTACTGGGGTTCGACTTCATCCGTGCCGGCGCCCGTGGCTATCTCGCCATCGACGGCGGCATC
GCGGTACCCGAGGTGCTGGGCAGCCGTTCGACCTACGGTCTGGGGGCGATCGGTGGCTTGCAGGGACGGCGA
CTGGCGGAGGGCGACCTGCTGCCCCTGGGGCCTGCCTCGCCCTCTGCCGTGGAGGGCTTGGCGCTGCCGCGC
TCGTTGCAGGTGGAGGTCGGTGGCGAGGTGAGCTTGCGGGTGGTTCCCGGGCTCTACGTCCATCGCCTGACC
CCCGACGCGGTCGAGCGTTTCTTCGCCGAGACCTGGACCGTCGGCTCGGAGGCGGACCGCACCGGCTACCGC
TTCAAGGGCGGCACGGCGCTCCGGTTCGAGCCGCGCGAACAGCCATTCGGCGCAGGCTCGGACCCGTCCAAC
ATCGTCGACGCCTGCTATCCCATCGGCTCGATCCAGGTACCGGGCGGGCTCGAACCCATCGTCCTGCATCGT
GATGCGGTGTCCGGTGGGGGATATGCCACGCTGGGCACGGTGATCAGCCCCGACCTGAACCGGCTGGCGCAG
ATGCAACCGAACCAGAAGGCGCGTTTCGTCGCCGTCAGCCTGGAGGAAGGTCTCGAGGCGCGTCGCCGTTAC
AACTGGCAAGTGCAACGACTCCAGCACTTCTTCCTGCGCTGA
Translation:
MSIKVLKPGLATSVQDAGREGHYHLGIPPSGALDQYALRAANLLVGNAPTAAVLECALLGPQLEFQRDALVA
VCGARMTPRLEGAEMPLDTSFRVRAGQVLGFDFIRAGARGYLAIDGGIAVPEVLGSRSTYGLGAIGGLQGRR
LAEGDLLPLGPASPSAVEGLALPRSLQVEVGGEVSLRVVPGLYVHRLTPDAVERFFAETWTVGSEADRTGYR
FKGGTALRFEPREQPFGAGSDPSNIVDACYPIGSIQVPGGLEPIVLHRDAVSGGGYATLGTVISPDLNRLAQ
MQPNQKARFVAVSLEEGLEARRRYNWQVQRLQHFFLR*
AnnotationID:2188GeneID:2180
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 04:04:44
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA0496
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02626
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56427.1| (AE016866) urea amidolyase-related protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 324

 Score =  452 bits (1162), Expect = e-126
 Identities = 231/321 (71%), Positives = 257/321 (80%)

>gb|AAN68530.1|AE016485_3 (AE016784) urea amidolyase-related protein [Pseudomonas putida
           KT2440]
          Length = 323

 Score =  451 bits (1160), Expect = e-126
 Identities = 228/321 (71%), Positives = 259/321 (80%)








 
Structural Features:
pfam02626, AHS2, Allophanate hydrolase subunit 2.
CD-Length = 282 residues,  98.2% aligned
Score =  214 bits (547), Expect = 9e-57
Identities = 109/287 (37%), Positives = 151/287 (52%), Gaps = 10/287 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4363




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21509




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33807




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2180_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2180
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3723
                           PA0496_tr
                           translation of PA0496
                           325
                           99.69
                           99.69
                           0
                           1664.0
     

     
     
114613
                           gb|AAG03885.1|AE004486_14
                           (AE004486) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           325
                           99.69
                           99.69
                           0
                           1664.0
     

     
     
114614
                           gb|AAO56427.1|
                           (AE016866) urea amidolyase-related protein [Pseudomonas syringae pv. tomato str. DC3000]
                           325
                           71.07
                           79.07
                           1
                           1159.0
     

     
     
114615
                           gb|AAN68530.1|AE016485_3
                           (AE016784) urea amidolyase-related protein [Pseudomonas putida KT2440]
                           325
                           70.15
                           79.69
                           2
                           1157.0
     

     
     
114616
                           gb|AAK23804.1|
                           (AE005857) urea amidolyase-related protein [Caulobacter crescentus CB15]
                           1215
                           10.94
                           14.23
                           898
                           460.0
     

     






      

          
GC ORFID: 45182How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0496Glimmer Score: 

          
Start: 6369381Stop: 6370358

          
Length: 978


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0496 translation of PA0496Homolog Bit Score 645.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2723 (ORF: BLASTX 447.0), t_PA0496 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGATTAAGGTGCTCAAGCCCGGCCTTGCCACCTCGGTGCAGGACGCCGGCCGCGAAGGCCACTATCAC 
CTGGGTATCCCGCCGTCCGGCGCGCTCGACCAGTACGCCCTGCGCGCGGCCAACCTGCTGGTGGGCAACGCA 
CCGACCGCCGCCGTGCTGGAGTGCGCGCTGCTGGGTCCGCAGCTGGAGTTCCAGCGCGACGCCCTGGTGGCC 
GTGTGCGGGGCGCGCATGACGCCTCGCCTGGAGGGCGCGGAGATGCCGCTGGATACTTCCTTCCGGGTTCGC 
GCCGGCCAGGTACTGGGGTTCGACTTCATCCGTGCCGGCGCCCGTGGCTATCTCGCCATCGACGGCGGCATC 
GCGGTACCCGAGGTGCTGGGCAGCCGTTCGACCTACGGTCTGGGGGCGATCGGTGGCTTGCAGGGACGGCGA 
CTGGCGGAGGGCGACCTGCTGCCCCTGGGGCCTGCCTCGCCCTCTGCCGTGGAGGGCTTGGCGCTGCCGCGC 
TCGTTGCAGGTGGAGGTCGGTGGCGAGGTGAGCTTGCGGGTGGTTCCCGGGCTCTACGTCCATCGCCTGACC 
CCCGACGCGGTCGAGCGTTTCTTCGCCGAGACCTGGACCGTCGGCTCGGAGGCGGACCGCACCGGCTACCGC 
TTCAAGGGCGGCACGGCGCTCCGGTTCGAGCCGCGCGAACAGCCATTCGGCGCAGGCTCGGACCCGTCCAAC 
ATCGTCGACGCCTGCTATCCCATCGGCTCGATCCAGGTACCGGGCGGGCTCGAACCCATCGTCCTGCATCGT 
GATGCGGTGTCCGGTGGGGGATATGCCACGCTGGGCACGGTGATCAGCCCCGACCTGAACCGGCTGGCGCAG 
ATGCAACCGAACCAGAAGGCGCGTTTCGTCGCCGTCAGCCTGGAGGAAGGTCTCGAGGCGCGTCGCCGTTAC 
AACTGGCAAGTGCAACGACTCCAGCACTTCTTCCTGCGCTGA