ViewGene
Locus Name:
GeneID:
Location:

GeneID:218
TrivialName: PA14_27550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27550
PAO1 Ortholog Locus:PA2824
Sequence Length:2361
Protein Length:786
Start: 2392292
Stop: 2389932
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06212.1|AE004709_5 (AE004709) probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
Identities = 781/786 (99%), Positives = 783/786 (99%)
Sequence:
ATGCTAGGCGGCAGAACCTCGCCAAGGCTGATCCCCGCCCCCATGGATATAGCGCTGACCCATCGCCTGTCG
TTCAAACAGGCCAGCCTCACCGTGCTGGTGGCCTTTATCCTGGGAACCCTGCTCAGCCTGATTCAGGTTGGC
GTCGATTATGCCAGCCAGGACGCATCCATCAATCGCGAAGTGCGCGCGCTGCTGGACGTCAGCCACAACCCC
GCCGCGCGAATCGCCTACAACATCGATGCGGAGCTGGCCCAGGAGCTGGTCCTCGGCCTGCTGCGTTCGCCC
GCCGTAGTCCGCGCGGAAATCATCGACACCTCCGGCCTGCCGCTGGCCAGCGCCTCGCGCGAACCCGCCGAA
AGCCGCCTGCGGCCGCTCAGCGACTTCCTCTTCGGCCACAAGCGGGTCTACGAGGACCCGTTGCATGTCGAC
CATGCGCCGGGCGAGGCCCTCGGCGTACTGCAGCTGGAAATCGACACCTTCGTGTTCGGCAACGACTTCCTC
CGTCGCGCCGGCATCACCCTGCTCTCCGGCTTCGTGCGCAGCCTGCTGCTGTCGCTGATCCTGCTGGTGCTC
TTCTACACCCTGCTGACCAAGCCCCTGGTCAGCCTGATCCAGGCCCTCAGCGGACACGATCCACGCTCGCCG
GCACGCATGCGCCTGCCCTGCCCCAAGGGCCACGAACGCGACGAGATCGGCGTGCTGGTGGAAGTCATCAAC
CGCCAGCTCGGGCGCATCTCGGTAGAGATCGAACAGCGCAGGGAGGCGGAGAACCGCCTGACCCAGTATCTG
GAGGAGCTGGAAAGCATCGTCGCCGCCCGTACCGCCGAGCTGAAGGCCGCCAACGCGCGCCTGACGCTGTCC
AACCAGGAACTCGAAGAAGCCCGCCAGACCGCCCTCGACATGGCCCAGGCCCGCGCCAGCTTCCTGGCCAAC
ATGAGCCACGAGATCCGCACGCCGCTGAACGGCCTGCTCGGCATGCTCTCGCTGAGCCTCGACGGCCCGCTC
ACCCCGGAACAGCGCCAACAGCTGTCGATCGCCCACGACTCCGGCAAGGTGCTGGTGGAATTGCTCAACGAC
GTGCTCGACCTCTCCAAGTTCGAGGCCGGGCAACTGGTCCTGGAACAGATCCCGTTCGACCTGGGCGTCCTG
GTGGAAGACACCGCCAGCCTCCTCTCGCAGAACGCCGCGGCCGGCGTGGAGTTGACCTGCCTGGTCGACCCC
GCCCTGCCCGCCCAGGTTTCCGGCGACCCGACGCGGATTCGCCAGGTCGTCAGCAACCTGCTGTCCAACGCG
CTGAAGTTCACCCGCCTGGGGCGGGTCGACGTTCGCGTGGAAGCCACCGCCGAGGGTGTGCGCATCAGTGTG
CGCGACACCGGCATCGGCATCGCCCAGGAGGCGCTGGATCGCATCTTCCAACCGTTCACCCAGGCCGACGCG
GGTATCACCCGCCAATACGGCGGCACCGGCCTCGGCCTGGCCCTCACGCGCAAGCTGTGCGAGGCCATGCAG
GGCGAACTGACGGTGGAGTCGACGGTCGGCCTGGGCAGCCTGTTCAGCGTCGGCCTGCCGCTGGCGCCGGTC
AGCCCTCCGCTACAGGCGCTGCCGCTGCGCGGCCGGGTGATCGCGCAATGCTCGGCCAACAGCGGGCTGGCG
CAGCTGCTGCAAACCTGGCTGCCGCGCTGGGGCCTGGAGTACAAGCGTCTGGAGACCGACGACAGCCTGCTC
GGCCACTCGCTCGACGTACTGATATCGGATTGCCCGGACTGCCTGATGGGACTGCGTCCGAGCATCGGTACG
CCGATCCTGCTGGTCACCGCCTACGGCAGTTTCCTCGAACCGGAGCTGGCCCGCCGCCTGTCGCCGTTGCGC
CAACTGGCCAGGCCGCTGAGTCGCAACCAGTTGTACCAGGCCCTGAAACACGTGCTCGAACACACCGCCATA
GCCCCGTCGAGCGCCTCGGACACCGCGGGAGAACAGCGCGACACCCGGGTCCTGCTGGTGGAGGACAACCCG
GTCAACCAGTTGGTCGCCAAGGGCCTGCTGCACAAGCTCGGCTGCCAGGTATGGATCGCCGAACACGGGCTG
AATGCCCTGAAGATGCTGGAGGAGCATCCCATCGACCTGGTCCTGATGGACTGCAACATGCCGGTGATGGAC
GGCTACGAAGCGACCCGGCAGATCCGCGACAGCGGACGCTGGGGCGGCCTGCCGATCATCGCGCTGACCGCC
AACGCCCTGCCGGACGAGCGCGAACGTTGTCGTGCCGCCGGCATGGACGACTACCTGGCCAAGCCCTTCCAC
CGCGACGAACTGAAGGCCATCCTCGACCGCTGGTGCCCGCTCACCGCGGGCGACTAG
Translation:
MLGGRTSPRLIPAPMDIALTHRLSFKQASLTVLVAFILGTLLSLIQVGVDYASQDASINREVRALLDVSHNP
AARIAYNIDAELAQELVLGLLRSPAVVRAEIIDTSGLPLASASREPAESRLRPLSDFLFGHKRVYEDPLHVD
HAPGEALGVLQLEIDTFVFGNDFLRRAGITLLSGFVRSLLLSLILLVLFYTLLTKPLVSLIQALSGHDPRSP
ARMRLPCPKGHERDEIGVLVEVINRQLGRISVEIEQRREAENRLTQYLEELESIVAARTAELKAANARLTLS
NQELEEARQTALDMAQARASFLANMSHEIRTPLNGLLGMLSLSLDGPLTPEQRQQLSIAHDSGKVLVELLND
VLDLSKFEAGQLVLEQIPFDLGVLVEDTASLLSQNAAAGVELTCLVDPALPAQVSGDPTRIRQVVSNLLSNA
LKFTRLGRVDVRVEATAEGVRISVRDTGIGIAQEALDRIFQPFTQADAGITRQYGGTGLGLALTRKLCEAMQ
GELTVESTVGLGSLFSVGLPLAPVSPPLQALPLRGRVIAQCSANSGLAQLLQTWLPRWGLEYKRLETDDSLL
GHSLDVLISDCPDCLMGLRPSIGTPILLVTAYGSFLEPELARRLSPLRQLARPLSRNQLYQALKHVLEHTAI
APSSASDTAGEQRDTRVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMD
GYEATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRWCPLTAGD*
AnnotationID:228GeneID:218
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 13:01:21
Gene Name:
Confidence Code:3
GeneProduct:putative sensor/response regulator hybrid
Cell Localization:()
Synonyms:PA2824
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative sensor histidine kinase/response regulator
Functional Category Confidence Code:5
COGs:smart00387,pfam02518
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67494.1|AE016376_4 (AE016780) sensor histidine kinase/response regulator [Pseudomonas
           putida KT2440]
          Length = 785

 Score =  969 bits (2506), Expect = 0.0
 Identities = 504/770 (65%), Positives = 603/770 (78%), Gaps = 1/770 (0%)

>gb|AAO55302.1| (AE016862) sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 783

 Score =  930 bits (2404), Expect = 0.0
 Identities = 494/781 (63%), Positives = 592/781 (75%), Gaps = 13/781 (1%)








 
Structural Features:
smart00387, HATPase_c, Histidine kinase-like ATPases
CD-Length = 112 residues, 100.0% aligned
Score =  120 bits (302), Expect = 7e-28
Identities = 55/113 (48%), Positives = 77/113 (68%), Gaps = 2/113 (1%)

pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CD-Length = 111 residues, 100.0% aligned
Score =  113 bits (285), Expect = 6e-26
Identities = 57/112 (50%), Positives = 75/112 (66%), Gaps = 2/112 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:439




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17581




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38091




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:218_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:218
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
379
                           PA2824_tr
                           translation of PA2824
                           786
                           99.36
                           99.61
                           0
                           3920.0
     

     
     
22274
                           gb|AAG06212.1|AE004709_5
                           (AE004709) probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
                           786
                           99.36
                           99.61
                           0
                           3920.0
     

     
     
22275
                           gb|AAN67494.1|AE016376_4
                           (AE016780) sensor histidine kinase/response regulator [Pseudomonas putida KT2440]
                           787
                           64.42
                           77.00
                           3
                           2508.0
     

     
     
22276
                           gb|AAO55302.1|
                           (AE016862) sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           800
                           61.87
                           74.12
                           31
                           2413.0
     

     
     
380
                           PA3462_tr
                           translation of PA3462
                           978
                           30.67
                           42.33
                           251
                           832.0
     

     






      

          
GC ORFID: 43220How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2824Glimmer Score: 

          
Start: 2561635Stop: 2563995

          
Length: 2361


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2824 translation of PA2824Homolog Bit Score 1514.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7663 (ORF: BLASTX 935.0), t_PA2824 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTAGGCGGCAGAACCTCGCCAAGGCTGATCCCCGCCCCCATGGATATAGCGCTGACCCATCGCCTGTCG 
TTCAAACAGGCCAGCCTCACCGTGCTGGTGGCCTTTATCCTGGGAACCCTGCTCAGCCTGATTCAGGTTGGC 
GTCGATTATGCCAGCCAGGACGCATCCATCAATCGCGAAGTGCGCGCGCTGCTGGACGTCAGCCACAACCCC 
GCCGCGCGAATCGCCTACAACATCGATGCGGAGCTGGCCCAGGAGCTGGTCCTCGGCCTGCTGCGTTCGCCC 
GCCGTAGTCCGCGCGGAAATCATCGACACCTCCGGCCTGCCGCTGGCCAGCGCCTCGCGCGAACCCGCCGAA 
AGCCGCCTGCGGCCGCTCAGCGACTTCCTCTTCGGCCACAAGCGGGTCTACGAGGACCCGTTGCATGTCGAC 
CATGCGCCGGGCGAGGCCCTCGGCGTACTGCAGCTGGAAATCGACACCTTCGTGTTCGGCAACGACTTCCTC 
CGTCGCGCCGGCATCACCCTGCTCTCCGGCTTCGTGCGCAGCCTGCTGCTGTCGCTGATCCTGCTGGTGCTC 
TTCTACACCCTGCTGACCAAGCCCCTGGTCAGCCTGATCCAGGCCCTCAGCGGACACGATCCACGCTCGCCG 
GCACGCATGCGCCTGCCCTGCCCCAAGGGCCACGAACGCGACGAGATCGGCGTGCTGGTGGAAGTCATCAAC 
CGCCAGCTCGGGCGCATCTCGGTAGAGATCGAACAGCGCAGGGAGGCGGAGAACCGCCTGACCCAGTATCTG 
GAGGAGCTGGAAAGCATCGTCGCCGCCCGTACCGCCGAGCTGAAGGCCGCCAACGCGCGCCTGACGCTGTCC 
AACCAGGAACTCGAAGAAGCCCGCCAGACCGCCCTCGACATGGCCCAGGCCCGCGCCAGCTTCCTGGCCAAC 
ATGAGCCACGAGATCCGCACGCCGCTGAACGGCCTGCTCGGCATGCTCTCGCTGAGCCTCGACGGCCCGCTC 
ACCCCGGAACAGCGCCAACAGCTGTCGATCGCCCACGACTCCGGCAAGGTGCTGGTGGAATTGCTCAACGAC 
GTGCTCGACCTCTCCAAGTTCGAGGCCGGGCAACTGGTCCTGGAACAGATCCCGTTCGACCTGGGCGTCCTG 
GTGGAAGACACCGCCAGCCTCCTCTCGCAGAACGCCGCGGCCGGCGTGGAGTTGACCTGCCTGGTCGACCCC 
GCCCTGCCCGCCCAGGTTTCCGGCGACCCGACGCGGATTCGCCAGGTCGTCAGCAACCTGCTGTCCAACGCG 
CTGAAGTTCACCCGCCTGGGGCGGGTCGACGTTCGCGTGGAAGCCACCGCCGAGGGTGTGCGCATCAGTGTG 
CGCGACACCGGCATCGGCATCGCCCAGGAGGCGCTGGATCGCATCTTCCAACCGTTCACCCAGGCCGACGCG 
GGTATCACCCGCCAATACGGCGGCACCGGCCTCGGCCTGGCCCTCACGCGCAAGCTGTGCGAGGCCATGCAG 
GGCGAACTGACGGTGGAGTCGACGGTCGGCCTGGGCAGCCTGTTCAGCGTCGGCCTGCCGCTGGCGCCGGTC 
AGCCCTCCGCTACAGGCGCTGCCGCTGCGCGGCCGGGTGATCGCGCAATGCTCGGCCAACAGCGGGCTGGCG 
CAGCTGCTGCAAACCTGGCTGCCGCGCTGGGGCCTGGAGTACAAGCGTCTGGAGACCGACGACAGCCTGCTC 
GGCCACTCGCTCGACGTACTGATATCGGATTGCCCGGACTGCCTGATGGGACTGCGTCCGAGCATCGGTACG 
CCGATCCTGCTGGTCACCGCCTACGGCAGTTTCCTCGAACCGGAGCTGGCCCGCCGCCTGTCGCCGTTGCGC 
CAACTGGCCAGGCCGCTGAGTCGCAACCAGTTGTACCAGGCCCTGAAACACGTGCTCGAACACACCGCCATA 
GCCCCGTCGAGCGCCTCGGACACCGCGGGAGAACAGCGCGACACCCGGGTCCTGCTGGTGGAGGACAACCCG 
GTCAACCAGTTGGTCGCCAAGGGCCTGCTGCACAAGCTCGGCTGCCAGGTATGGATCGCCGAACACGGGCTG 
AATGCCCTGAAGATGCTGGAGGAGCATCCCATCGACCTGGTCCTGATGGACTGCAACATGCCGGTGATGGAC 
GGCTACGAAGCGACCCGGCAGATCCGCGACAGCGGACGCTGGGGCGGCCTGCCGATCATCGCGCTGACCGCC 
AACGCCCTGCCGGACGAGCGCGAACGTTGTCGTGCCGCCGGCATGGACGACTACCTGGCCAAGCCCTTCCAC 
CGCGACGAACTGAAGGCCATCCTCGACCGCTGGTGCCCGCTCACCGCGGGCGACTAG