ViewGene
Locus Name:
GeneID:
Location:

GeneID:2179
TrivialName: PA14_71300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71300
PAO1 Ortholog Locus:PA5400
Sequence Length:987
Protein Length:328
Start: 6353285
Stop: 6354271
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08785.1|AE004952_7 (AE004952) probable electron transfer flavoprotein alpha subunit [Pseudomonas aeruginosa PAO1]
Identities = 324/328 (98%), Positives = 325/328 (99%)
Sequence:
TTGCCACTGCATGTGGTCGAGCAACCGGCATTCCTCGTCGCGGTGGTCCCGGACATGGTCGGCGGCCGTCTC
TCCAGCCACGACAAGGACCTCCTCGGACTGGCCCGCAAGCTCGCCGGCAACGACGGCGCGGTGCTCGCCGTG
GTGTTCGGCGAACACAAGGAAAGCGCCTTCGACAGCGCCGGCGTCGACCGCCTGCTGCACCTCGCCGGCGGC
GAGTACGACGGCTACGCGCCCGAGCAGCGAATACTCGCCCTGCGCAACCTGGAGAACCAGCTCGCCCCGCGC
CACTGGCTGTTCCCGGACAGTCGCAACGGCGGCGGCGAACTGGGCCGGCGCCTGGCCGCTGCGCTCGGCGAA
CGGCCGGCCGGACGCGTCTGGCAGGTCGAGGACGGCCGCTGCATCGGCCGCGCCGGCGCCGGCCGCGAGGAC
ATCCAGCGCGCCCTGCCGCGCCTGCTGCTGGCCGCGGCGGAATGCGCCGAGCCGGTCAGCGAAACCCGCCAT
GAGGCTCGCGAGCTGCACATGGCCGCGCAGGTGGCGCGCAACCTGCCACGCATCGAGGACCTCGGCCCGGTG
GCCGTGGACCCGGCGCGGATCCCCATGGCCGAGGCCGAATTCATTCTCTCCGGCGGCAACGGCGTGCAGGAC
TGGACGCTGTTCCACCAGGCCGCCGCCGCCCTCGGCGCCACCGAGGGCGCCTCGCGGGTGGCGGTGGACGAC
GGGCACATGCCGCGCAACCGTCAGGTCGGCGCCACCGGTACCTGGGTCACCGCGCGGGTCTACCTGGCGGTG
GGCATCTCCGGGGCGATCCAGCACCTGCAGGGCATAGGCGCCTGCGACAAGGTGGTGGCGGTGAACCGCGAC
GCCGGCTGCGACATGATCAAGCGCGCCGATCTCTCGGTGATCGGCGACTCGACGGAAATCCTCCGCGCGCTG
ATCCGCCTGGCCGAGGCACATCGCAACGGCGCCGCCCGCGATGCGGCCTGA
Translation:
MPLHVVEQPAFLVAVVPDMVGGRLSSHDKDLLGLARKLAGNDGAVLAVVFGEHKESAFDSAGVDRLLHLAGG
EYDGYAPEQRILALRNLENQLAPRHWLFPDSRNGGGELGRRLAAALGERPAGRVWQVEDGRCIGRAGAGRED
IQRALPRLLLAAAECAEPVSETRHEARELHMAAQVARNLPRIEDLGPVAVDPARIPMAEAEFILSGGNGVQD
WTLFHQAAAALGATEGASRVAVDDGHMPRNRQVGATGTWVTARVYLAVGISGAIQHLQGIGACDKVVAVNRD
AGCDMIKRADLSVIGDSTEILRALIRLAEAHRNGAARDAA*
AnnotationID:2187GeneID:2179
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 11:11:00
Gene Name:
Confidence Code:3
GeneProduct:putative electron transfer flavoprotein, alpha subunit
Cell Localization:()
Synonyms:etfA-1
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2025,pfam00766
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65943.1|AE016222_5 (AE016775) electron transfer flavoprotein, alpha subunit
           [Pseudomonas putida KT2440]
          Length = 328

 Score =  509 bits (1311), Expect = e-144

>gb|AAO53942.1| (AE016857) electron transfer flavoprotein, alpha subunit
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 328

 Score =  492 bits (1267), Expect = e-138
 Identities = 247/328 (75%), Positives = 275/328 (83%)






 
Structural Features:
COG2025, FixB, Electron transfer flavoprotein, alpha subunit 
[Energy production and conversion]
CD-Length = 313 residues,  99.4% aligned
Score =  235 bits (601), Expect = 6e-63
Identities = 107/318 (33%), Positives = 147/318 (46%), Gaps = 18/318 (5%)

pfam00766, ETF_alpha, Electron transfer flavoprotein alpha subunit.
CD-Length = 280 residues,  93.9% aligned
Score =  108 bits (270), Expect = 1e-24
Identities = 80/265 (30%), Positives = 106/265 (40%), Gaps = 19/265 (7%)








   
Genomic Context:






   
Comment:


















    ReferenceID:14525




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21507




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34698




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2179_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2179
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3722
                           PA5400_tr
                           translation of PA5400
                           328
                           98.78
                           99.08
                           0
                           1663.0
     

     
     
114610
                           gb|AAG08785.1|AE004952_7
                           (AE004952) probable electron transfer flavoprotein alpha subunit [Pseudomonas aeruginosa PAO1]
                           328
                           98.47
                           99.08
                           0
                           1661.0
     

     
     
114611
                           gb|AAN65943.1|AE016222_5
                           (AE016775) electron transfer flavoprotein, alpha subunit [Pseudomonas putida KT2440]
                           328
                           76.21
                           86.58
                           0
                           1308.0
     

     
     
114612
                           gb|AAO53942.1|
                           (AE016857) electron transfer flavoprotein, alpha subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           328
                           75.00
                           83.84
                           0
                           1264.0
     

     






      

          
GC ORFID: 45181How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5400Glimmer Score: 

          
Start: 5616974Stop: 5617960

          
Length: 987


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5400 translation of PA5400Homolog Bit Score 645.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6583 (ORF: BLASTX 614.0), t_PA5400 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGCCACTGCATGTGGTCGAGCAACCGGCATTCCTCGTCGCGGTGGTCCCGGACATGGTCGGCGGCCGTCTC 
TCCAGCCACGACAAGGACCTCCTCGGACTGGCCCGCAAGCTCGCCGGCAACGACGGCGCGGTGCTCGCCGTG 
GTGTTCGGCGAACACAAGGAAAGCGCCTTCGACAGCGCCGGCGTCGACCGCCTGCTGCACCTCGCCGGCGGC 
GAGTACGACGGCTACGCGCCCGAGCAGCGAATACTCGCCCTGCGCAACCTGGAGAACCAGCTCGCCCCGCGC 
CACTGGCTGTTCCCGGACAGTCGCAACGGCGGCGGCGAACTGGGCCGGCGCCTGGCCGCTGCGCTCGGCGAA 
CGGCCGGCCGGACGCGTCTGGCAGGTCGAGGACGGCCGCTGCATCGGCCGCGCCGGCGCCGGCCGCGAGGAC 
ATCCAGCGCGCCCTGCCGCGCCTGCTGCTGGCCGCGGCGGAATGCGCCGAGCCGGTCAGCGAAACCCGCCAT 
GAGGCTCGCGAGCTGCACATGGCCGCGCAGGTGGCGCGCAACCTGCCACGCATCGAGGACCTCGGCCCGGTG 
GCCGTGGACCCGGCGCGGATCCCCATGGCCGAGGCCGAATTCATTCTCTCCGGCGGCAACGGCGTGCAGGAC 
TGGACGCTGTTCCACCAGGCCGCCGCCGCCCTCGGCGCCACCGAGGGCGCCTCGCGGGTGGCGGTGGACGAC 
GGGCACATGCCGCGCAACCGTCAGGTCGGCGCCACCGGTACCTGGGTCACCGCGCGGGTCTACCTGGCGGTG 
GGCATCTCCGGGGCGATCCAGCACCTGCAGGGCATAGGCGCCTGCGACAAGGTGGTGGCGGTGAACCGCGAC 
GCCGGCTGCGACATGATCAAGCGCGCCGATCTCTCGGTGATCGGCGACTCGACGGAAATCCTCCGCGCGCTG 
ATCCGCCTGGCCGAGGCACATCGCAACGGCGCCGCCCGCGATGCGGCCTGA