ViewGene
Locus Name:
GeneID:
Location:

GeneID:2178
TrivialName: PA14_69570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69570
PAO1 Ortholog Locus:PA5268
Sequence Length:981
Protein Length:326
Start: 6207883
Stop: 6206903
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08653.1|AE004939_5 (AE004939) magnesium/cobalt transport protein [Pseudomonas aeruginosa PAO1]
Identities = 325/326 (99%), Positives = 325/326 (99%)
Sequence:
ATGATCACCTATTACATCCTTTCCGGCGACCGCCTGGAGCGACGCCAGCACGACGATGCCCAGCGGGGGTTG
CCGCCGGGCACCCTGTGGATCGACCTGCATCACCCGACCCCCGAAGAGGAGCGCCTGCTCGAATCCCACCTG
CAGGTGAACATCCCGACCCGCGAGGAGATGGCCGAGATCGAGGATTCGTCGCGCTTCTACGAGGACGGCAAC
GTCCTCTACATGACCACTTCGGTGGTCGGCGGGATCACCGAGCACCGGCCGAGCACAGAGGAAGTGACCTTC
GTACTCAGCGAGAAATGGCTGATTACCGTGCGCTACGCCGACCTGCGTTCGTTCCGCGAGTTCGAGAACCGT
TGCATCCGCCAGCTCGACGCCAACCGCAGCAGCACCCAGTTGTTCGCCCTGATGATGGACAGCCTGGTGGAC
CGCATCGCCGACGTGTTGGAGGCCGTACAGGGGCAACTGAGCAGCATGTCGCGGGAGATCTTCGCCGAGTCC
ACCGCCCAGACCCGCAAGCCGAAGACCGACCTGCAGCAGATCATCAAGCACCTCGGGCGCAGCAGCTCGCTG
CTGTCCAAGCTCAACGACAGCCTGCTCAGCATCAATCGGATGAACAGCTATTTCCGCCAGGGTTGCAACGGC
TGGCTTTCCGAGCCGGCCAAGGTGCTGGCGAAGACCGTGGAGCGCGACGTGCGCTCGCTGGACGAGTACCTG
GCGAAGATGTCCACCGAGATCAACTTCCTCCTCGACGCGACCCTTGGCCTGATCAACATCGAGCAGAACAGC
ATCATCAAGGTGTTCTCCATCGCTGCCGTACTGTTCCTGCCGCCGACCCTGGTGGGCACCGTCTACGGCATG
AACTTCAAGGACATGCCCGAGCTGGACTGGTCCATCGGCTATCCGATGGCGCTGGGGATGATGGTGGTATCG
GCGATCCTTCCGTACCTCTGGTTCAAGTTCAAGAACTGGCTCTGA
Translation:
MITYYILSGDRLERRQHDDAQRGLPPGTLWIDLHHPTPEEERLLESHLQVNIPTREEMAEIEDSSRFYEDGN
VLYMTTSVVGGITEHRPSTEEVTFVLSEKWLITVRYADLRSFREFENRCIRQLDANRSSTQLFALMMDSLVD
RIADVLEAVQGQLSSMSREIFAESTAQTRKPKTDLQQIIKHLGRSSSLLSKLNDSLLSINRMNSYFRQGCNG
WLSEPAKVLAKTVERDVRSLDEYLAKMSTEINFLLDATLGLINIEQNSIIKVFSIAAVLFLPPTLVGTVYGM
NFKDMPELDWSIGYPMALGMMVVSAILPYLWFKFKNWL*
AnnotationID:2186GeneID:2178
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 07:07:23
Gene Name:corA
Confidence Code:2
GeneProduct:magnesium/cobalt transport protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0598,pfam01544
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC41756.1| (AL591783) PROBABLE MAGNESIUM AND COBALT TRANSPORT TRANSMEMBRANE
           PROTEIN [Sinorhizobium meliloti]
          Length = 329

 Score =  251 bits (642), Expect = 3e-66
 Identities = 129/302 (42%), Positives = 194/302 (64%), Gaps = 4/302 (1%)

>dbj|BAB49763.1| (AP003000) magnesium/cobalt transport protein [Mesorhizobium loti]
          Length = 324

 Score =  248 bits (633), Expect = 4e-65
 Identities = 133/327 (40%), Positives = 201/327 (61%), Gaps = 4/327 (1%)








 
Structural Features:
COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
CD-Length = 322 residues,  99.1% aligned
Score =  248 bits (634), Expect = 6e-67
Identities = 100/329 (30%), Positives = 164/329 (49%), Gaps = 13/329 (3%)

pfam01544, CorA, CorA-like Mg2+ transporter protein. 
CD-Length = 297 residues,  98.7% aligned
Score =  138 bits (348), Expect = 1e-33
Identities = 69/311 (22%), Positives = 132/311 (42%), Gaps = 31/311 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4359




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21505




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34813




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2178_cdd.html


    		




 
URL:

















    ReferenceID:35726




  
Author/Investigator(s):
        Berson O, Lidstrom ME.





  
Title:
        Cloning and characterization of corA, a gene encoding a copper-repressible polypeptide in the type I methanotroph, Methylomicrobium albus BG8.




  
PubMed:
        9084144


MedLine:
        




    
Source:
FEMS Microbiol Lett. 1997 Mar 15;148(2):169-74.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9084144

















    ReferenceID:35727




  
Author/Investigator(s):
        Smith RL, Banks JL, Snavely MD, Maguire ME.





  
Title:
        Sequence and topology of the CorA magnesium transport systems of Salmonella typhimurium and Escherichia coli. Identification of a new class of transport protein.




  
PubMed:
        8314774


MedLine:
        




    
Source:
J Biol Chem. 1993 Jul 5;268(19):14071-80.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8314774









           
Homologs By Global Alignment 

           

       



     
Gene ID:2178
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3721
                           PA5268_tr
                           translation of PA5268
                           326
                           99.69
                           99.69
                           0
                           1663.0
     

     
     
114603
                           gb|AAG08653.1|AE004939_5
                           (AE004939) magnesium/cobalt transport protein [Pseudomonas aeruginosa PAO1]
                           326
                           99.69
                           99.69
                           0
                           1663.0
     

     
     
114605
                           emb|CAC41756.1|
                           (AL591783) PROBABLE MAGNESIUM AND COBALT TRANSPORT TRANSMEMBRANE PROTEIN [Sinorhizobium meliloti]
                           333
                           41.74
                           60.36
                           11
                           648.0
     

     
     
114606
                           dbj|BAB49763.1|
                           (AP003000) magnesium/cobalt transport protein [Mesorhizobium loti]
                           330
                           40.90
                           61.51
                           10
                           644.0
     

     
     
114604
                           emb|CAE29882.1|
                           (BX572607) putative magnesium/cobalt transport protein [Rhodopseudomonas palustris CGA009]
                           328
                           40.54
                           63.71
                           4
                           657.0
     

     






      

          
GC ORFID: 45180How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5268Glimmer Score: 

          
Start: 5471570Stop: 5470590

          
Length: 981


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5268 translation of PA5268Homolog Bit Score 645.0

          
Other Homologs:  t_PA5268 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCACCTATTACATCCTTTCCGGCGACCGCCTGGAGCGACGCCAGCACGACGATGCCCAGCGGGGGTTG 
CCGCCGGGCACCCTGTGGATCGACCTGCATCACCCGACCCCCGAAGAGGAGCGCCTGCTCGAATCCCACCTG 
CAGGTGAACATCCCGACCCGCGAGGAGATGGCCGAGATCGAGGATTCGTCGCGCTTCTACGAGGACGGCAAC 
GTCCTCTACATGACCACTTCGGTGGTCGGCGGGATCACCGAGCACCGGCCGAGCACAGAGGAAGTGACCTTC 
GTACTCAGCGAGAAATGGCTGATTACCGTGCGCTACGCCGACCTGCGTTCGTTCCGCGAGTTCGAGAACCGT 
TGCATCCGCCAGCTCGACGCCAACCGCAGCAGCACCCAGTTGTTCGCCCTGATGATGGACAGCCTGGTGGAC 
CGCATCGCCGACGTGTTGGAGGCCGTACAGGGGCAACTGAGCAGCATGTCGCGGGAGATCTTCGCCGAGTCC 
ACCGCCCAGACCCGCAAGCCGAAGACCGACCTGCAGCAGATCATCAAGCACCTCGGGCGCAGCAGCTCGCTG 
CTGTCCAAGCTCAACGACAGCCTGCTCAGCATCAATCGGATGAACAGCTATTTCCGCCAGGGTTGCAACGGC 
TGGCTTTCCGAGCCGGCCAAGGTGCTGGCGAAGACCGTGGAGCGCGACGTGCGCTCGCTGGACGAGTACCTG 
GCGAAGATGTCCACCGAGATCAACTTCCTCCTCGACGCGACCCTTGGCCTGATCAACATCGAGCAGAACAGC 
ATCATCAAGGTGTTCTCCATCGCTGCCGTACTGTTCCTGCCGCCGACCCTGGTGGGCACCGTCTACGGCATG 
AACTTCAAGGACATGCCCGAGCTGGACTGGTCCATCGGCTATCCGATGGCGCTGGGGATGATGGTGGTATCG 
GCGATCCTTCCGTACCTCTGGTTCAAGTTCAAGAACTGGCTCTGA