ViewGene

Locus Name:
GeneID:
Location:

GeneID:2177
TrivialName: PA14_15810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15810
PAO1 Ortholog Locus:PA3759
Sequence Length:1023
Protein Length:340
Start: 1348748
Stop: 1347726
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07146.1|AE004794_11 (AE004794) probable aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 337/340 (99%), Positives = 338/340 (99%)
Sequence:
ATGACTTCGCTGATGCTCGAGGAAGCGCTCTCCGCCGCCGCGGTGGCGAGCCGTCAACTGGCCGTGCTCGAC
GCCTGCCTGCCGGCGCTTGGCCAGCGTCTGCGGGAGGTCGATCCGAACCTGGCACTGACTGTCGCGCGCGGC
AGCTCCGACCATGCCGCCAGCTACTTCGCCTACCTGGCCATGCAGCACGCCGGCTTGCCGGTGGCCTCGCTG
CCCATGTCGGTAGTGACCCTGAACCGCTCGCCACTGCGTGTCGCCGGGCAGGCCGTCTTCGCTTTCTCGCAG
TCCGGGCAGAGCCCCGATCTCGTGGACAGCCTGCGCATCCTGCGCGAACGCGGCGCCCTGGGCATCGCCCTG
GTGAATGCCGAGGATTCGCCGCTGGAAGCCGCCAGCGAATTCGTCGTGCCGCTCTGCGCCGGCGCCGAGCGC
AGCGTCGCAGCGACCAAGAGCTTCATCGCCACGCTCAGCGCCAGCGCCCGCCTGCTCGCCCACTGGCAGCGC
GACAATGCCCTGCTGGCCGCAGGCCAGGGCCTGGCGGCCGGGCTGGAGCAGGCCGCCAGGCTCGACTGGTCG
CCGGCCATCGAGGCCCTGCGCGACTGCCAGCGGCTGATGGTGATCGGTCGCGGCGCCGGCTACGCCATCGCC
CAGGAGGCCGCGCTGAAATTCAAGGAAACCTCGGCGATCCAGGCCGAGGCCTTCAGCAGCGCCGAGGTCCGC
CATGGACCGATGGCGCTGGTCGAGGAGCGCTATCCGCTGCTGGTGTTCGCTCCCCGCGGCCCGGAGCAGGAA
GGCCTGCTGGCGATCGCCGAGGATATGCGCCAGCGCGGTGCGCAGGTATTGCTCGCCGCCCCGGACGACATC
GCCGAACGCGACCTGCCGCTGCAGCGCGCCGCGCATCCGGCGCTCGATCCGATCCTGGCGATCCAGAGTTTC
TACGTCATGGCCGCCGGCCTGGCCGAAGCCCGCGGCATGGACCCGGACCAGCCACGGCACCTGAGCAAAGTC
ACCCGAACCCACTGA
Translation:
MTSLMLEEALSAAAVASRQLAVLDACLPALGQRLREVDPNLALTVARGSSDHAASYFAYLAMQHAGLPVASL
PMSVVTLNRSPLRVAGQAVFAFSQSGQSPDLVDSLRILRERGALGIALVNAEDSPLEAASEFVVPLCAGAER
SVAATKSFIATLSASARLLAHWQRDNALLAAGQGLAAGLEQAARLDWSPAIEALRDCQRLMVIGRGAGYAIA
QEAALKFKETSAIQAEAFSSAEVRHGPMALVEERYPLLVFAPRGPEQEGLLAIAEDMRQRGAQVLLAAPDDI
AERDLPLQRAAHPALDPILAIQSFYVMAAGLAEARGMDPDQPRHLSKVTRTH*
AnnotationID:2185GeneID:2177
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 11:11:18
Gene Name:
Confidence Code:3
GeneProduct:putative glucosamine-fructose-6-phosphate aminotransferase
Cell Localization:()
Synonyms:glmS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:AgaS, putative phophosugar isomerase
Functional Category Confidence Code:5
COGs:COG2222
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAK22522.1| (AE005726) SIS domain protein [Caulobacter crescentus CB15]
          Length = 358

 Score =  300 bits (767), Expect = 1e-80
 Identities = 169/335 (50%), Positives = 218/335 (65%), Gaps = 1/335 (0%)

>gb|AAM35603.1| (AE011701) glucosamine-fructose-6-phosphate aminotransferase
           [Xanthomonas axonopodis pv. citri str. 306]
          Length = 332

 Score =  283 bits (724), Expect = 1e-75
 Identities = 167/335 (49%), Positives = 202/335 (60%), Gaps = 4/335 (1%)
Structural Features:
COG2222, AgaS, Predicted phosphosugar isomerases 
[Cell envelope biogenesis, outer membrane]
CD-Length = 340 residues, 100.0% aligned
Score =  293 bits (751), Expect = 5e-80
Identities = 141/341 (41%), Positives = 180/341 (52%), Gaps = 3/341 (0%)
Genomic Context:
Comment:
ReferenceID:4357
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21503
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31799
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2177_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2177

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3720 PA3759_tr translation of PA3759 340 99.11 99.41 0 1663.0
114591 gb|AAG07146.1|AE004794_11 (AE004794) probable aminotransferase [Pseudomonas aeruginosa PAO1] 340 99.11 99.41 0 1663.0
114592 gb|AAQ58233.1| (AE016911) probable aminotransferase [Chromobacterium violaceum ATCC 12472] 340 63.23 76.17 4 1063.0
114594 gb|AAM42681.1| (AE012460) glucosamine-fructose-6-phosphate aminotransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] 340 49.11 60.00 8 728.0
114595 gb|AAM35603.1| (AE011701) glucosamine-fructose-6-phosphate aminotransferase [Xanthomonas axonopodis pv. citri str. 306] 340 49.11 59.41 8 724.0
GC ORFID: 45179How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3759Glimmer Score:
Start: 3605189Stop: 3606211
Length: 1023
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3759 translation of PA3759Homolog Bit Score 645.0
Other Homologs: t_PA3759 (ORF: GLIMMER)
GC ORF Sequence
ATGACTTCGCTGATGCTCGAGGAAGCGCTCTCCGCCGCCGCGGTGGCGAGCCGTCAACTGGCCGTGCTCGAC
GCCTGCCTGCCGGCGCTTGGCCAGCGTCTGCGGGAGGTCGATCCGAACCTGGCACTGACTGTCGCGCGCGGC
AGCTCCGACCATGCCGCCAGCTACTTCGCCTACCTGGCCATGCAGCACGCCGGCTTGCCGGTGGCCTCGCTG
CCCATGTCGGTAGTGACCCTGAACCGCTCGCCACTGCGTGTCGCCGGGCAGGCCGTCTTCGCTTTCTCGCAG
TCCGGGCAGAGCCCCGATCTCGTGGACAGCCTGCGCATCCTGCGCGAACGCGGCGCCCTGGGCATCGCCCTG
GTGAATGCCGAGGATTCGCCGCTGGAAGCCGCCAGCGAATTCGTCGTGCCGCTCTGCGCCGGCGCCGAGCGC
AGCGTCGCAGCGACCAAGAGCTTCATCGCCACGCTCAGCGCCAGCGCCCGCCTGCTCGCCCACTGGCAGCGC
GACAATGCCCTGCTGGCCGCAGGCCAGGGCCTGGCGGCCGGGCTGGAGCAGGCCGCCAGGCTCGACTGGTCG
CCGGCCATCGAGGCCCTGCGCGACTGCCAGCGGCTGATGGTGATCGGTCGCGGCGCCGGCTACGCCATCGCC
CAGGAGGCCGCGCTGAAATTCAAGGAAACCTCGGCGATCCAGGCCGAGGCCTTCAGCAGCGCCGAGGTCCGC
CATGGACCGATGGCGCTGGTCGAGGAGCGCTATCCGCTGCTGGTGTTCGCTCCCCGCGGCCCGGAGCAGGAA
GGCCTGCTGGCGATCGCCGAGGATATGCGCCAGCGCGGTGCGCAGGTATTGCTCGCCGCCCCGGACGACATC
GCCGAACGCGACCTGCCGCTGCAGCGCGCCGCGCATCCGGCGCTCGATCCGATCCTGGCGATCCAGAGTTTC
TACGTCATGGCCGCCGGCCTGGCCGAAGCCCGCGGCATGGACCCGGACCAGCCACGGCACCTGAGCAAAGTC
ACCCGAACCCACTGA