ViewGene

Locus Name:
GeneID:
Location:

GeneID:2176
TrivialName: PA14_24620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24620
PAO1 Ortholog Locus:PA3052
Sequence Length:981
Protein Length:326
Start: 2153292
Stop: 2152312
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06440.1|AE004730_4 (AE004730) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 322/326 (98%), Positives = 323/326 (99%)
Sequence:
ATGTCACGCCCGAACCTGTGCTTCAATGGACGGACCGTCGCCGTCCCCTCCCGCCCCTTTCCGCGTCGGTCG
CCGAGCCCGAGGAGCCCTCCGTCGATCATGAGTTCCAACTCGCGTAGCAACAGCACCTTCACCGGTCGCCTT
TCCGCACTCGCCAACCGCCTGCGCCTGGGTGCCGCGCGAAGCGATGGCCGGGAGCTGCGCGAACGGGCGGCC
GCCCTCGAGCTGCCGTTCCAGCCATTGCGACGGCCGGAGCCGAGCGTCTGGTGGCAGGCCGGACCGCCCCTG
CACACCCTGGTCGATCTGCCGCGCGGCGCGCTGTCCGGCCCGGTCCAGGAAGACAAGGCGGAAGCCCACACG
GTCCTCAAGCGCCTGGTGCGGGTCAGTCACTCCACCCTGGAGTCGGTCGACCTGAAGACCATCGAAGGCGTA
TGCAGCCGCGAGATCCTCGTCCAGACACCTTGCCCACGCCTGGAAGACCTGGCCACGGCCGAGGTCTGCCGG
GGCGTACGGATCATCAGCTACAAGGATTTCGTCAAGGCCCTGAGCCTGGCCCTGCCGCGTTTCACCAACGGC
GACAGCATCCGCCTGCGCCAGGCCGCCTGGCACGGCGAGCGCCTGTTCTGGGCGGGCGAACGTCAGGCCTGC
GCCTTCGCCGCGGCGATCGTCTACGCCCGCCGCCGCGAACTGGAACTGAAGCTGCCGGCACACCTGGAACGC
TACGAACTGGAGCCCGGCGCGCTGGACGAACTGGAACAGCGCTACCACATGCTGCGGATTCCGACCCAGGCC
TGGTCCGAGCCGACCTTCATGAGCCTGCTGCTGGATACCGGCCTGCCCTATGCGCGACTCGCCCTGTTCACC
CCGGAAACCCCGGAGTGCCTGTTGCTGCCCCGCAACGACGAACGCGCCGATGCCCTCGGCGAAGGTCTGCGG
GCGGCTGGCGCAGCAGACGTGGTGAAGTATCTGAAGCAACTGTAG
Translation:
MSRPNLCFNGRTVAVPSRPFPRRSPSPRSPPSIMSSNSRSNSTFTGRLSALANRLRLGAARSDGRELRERAA
ALELPFQPLRRPEPSVWWQAGPPLHTLVDLPRGALSGPVQEDKAEAHTVLKRLVRVSHSTLESVDLKTIEGV
CSREILVQTPCPRLEDLATAEVCRGVRIISYKDFVKALSLALPRFTNGDSIRLRQAAWHGERLFWAGERQAC
AFAAAIVYARRRELELKLPAHLERYELEPGALDELEQRYHMLRIPTQAWSEPTFMSLLLDTGLPYARLALFT
PETPECLLLPRNDERADALGEGLRAAGAADVVKYLKQL*
AnnotationID:2184GeneID:2176
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 07:07:11
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3052
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:4355
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21501
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2176

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3719 PA3052_tr translation of PA3052 326 98.77 99.07 0 1665.0
114590 gb|AAG06440.1|AE004730_4 (AE004730) hypothetical protein PA3052 [Pseudomonas aeruginosa PAO1] 326 98.77 99.07 0 1665.0
GC ORFID: 45178How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3052Glimmer Score:
Start: 2800637Stop: 2801617
Length: 981
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3052 translation of PA3052Homolog Bit Score 645.0
Other Homologs: t_PA3052 (ORF: GLIMMER)
GC ORF Sequence
ATGTCACGCCCGAACCTGTGCTTCAATGGACGGACCGTCGCCGTCCCCTCCCGCCCCTTTCCGCGTCGGTCG
CCGAGCCCGAGGAGCCCTCCGTCGATCATGAGTTCCAACTCGCGTAGCAACAGCACCTTCACCGGTCGCCTT
TCCGCACTCGCCAACCGCCTGCGCCTGGGTGCCGCGCGAAGCGATGGCCGGGAGCTGCGCGAACGGGCGGCC
GCCCTCGAGCTGCCGTTCCAGCCATTGCGACGGCCGGAGCCGAGCGTCTGGTGGCAGGCCGGACCGCCCCTG
CACACCCTGGTCGATCTGCCGCGCGGCGCGCTGTCCGGCCCGGTCCAGGAAGACAAGGCGGAAGCCCACACG
GTCCTCAAGCGCCTGGTGCGGGTCAGTCACTCCACCCTGGAGTCGGTCGACCTGAAGACCATCGAAGGCGTA
TGCAGCCGCGAGATCCTCGTCCAGACACCTTGCCCACGCCTGGAAGACCTGGCCACGGCCGAGGTCTGCCGG
GGCGTACGGATCATCAGCTACAAGGATTTCGTCAAGGCCCTGAGCCTGGCCCTGCCGCGTTTCACCAACGGC
GACAGCATCCGCCTGCGCCAGGCCGCCTGGCACGGCGAGCGCCTGTTCTGGGCGGGCGAACGTCAGGCCTGC
GCCTTCGCCGCGGCGATCGTCTACGCCCGCCGCCGCGAACTGGAACTGAAGCTGCCGGCACACCTGGAACGC
TACGAACTGGAGCCCGGCGCGCTGGACGAACTGGAACAGCGCTACCACATGCTGCGGATTCCGACCCAGGCC
TGGTCCGAGCCGACCTTCATGAGCCTGCTGCTGGATACCGGCCTGCCCTATGCGCGACTCGCCCTGTTCACC
CCGGAAACCCCGGAGTGCCTGTTGCTGCCCCGCAACGACGAACGCGCCGATGCCCTCGGCGAAGGTCTGCGG
GCGGCTGGCGCAGCAGACGTGGTGAAGTATCTGAAGCAACTGTAG