ViewGene
Locus Name:
GeneID:
Location:

GeneID:2175
TrivialName: PA14_33110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33110
PAO1 Ortholog Locus:PA2437
Sequence Length:1041
Protein Length:346
Start: 2898633
Stop: 2899673
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05825.1|AE004671_1 (AE004671) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 340/346 (98%), Positives = 341/346 (98%)
Sequence:
ATGAGCGACGAAGCGCACGAGGGGCTGCGCAGCCCCTGGCTGCAGGCCGGACGCCTGGCGTTCCTCGCACTG
TTCGGCGTGACCCTCCTGGCGGCGCTGGCCTGGGTGTTTTCCAACGTCCGCCAGATCGGCCCGGAGAACCGC
GCCGTAGTGCTGCGCCTGGGCGCGCTGGAGCGCCTGGCCGGTCCCGGCCTGCTGCTGGCCTGGCCGCAGCCG
CTGGAGCAGGTGGTGCTGCTGCCGTCCGCCGAACAGGTGATCGAACGCCGCGTCGAGGGCCTGCTGCGCTCC
GAGCAGGCGCGTCGCGCCGACCTCGACGTCAGCCTGTCCAGCGACGCGCTGGCCGGCTCCGGCTACCTGCTG
ACCGGCGACGCCGGGGTGGTGCAACTGGACGTGCGGGTGTTCTACAAGGTCGACGACCCGTACGACTACGTC
CTCCAGGGCGCCCACGTGCTGCCGGCGCTGGACCGGCTGGTGGCGCGCAACGCCGTGCAGGtCTGCGCCGCG
CGCGACCTGGACACCATCCTGGTGGCGCGCCCGGAGTTGCTCGGCAACGACAGCGCGGTCGCCGAGCGCCGC
GAACGCCTGCGCGGCGACCTGGTGCAGGGCATCAACCACAGCCTGGCGGCGCTGGCCGCGGCCGGCAGCGGG
CTGGGCATCCAGGTGGTGCGGGTCGACGTGCAGTCGAGCCTGCCGCGCAATGCGGTAAGCGCTTTCAACGCG
GTGCTGACCGCCAGCCAACTGGCCGAGCAGAACGTCGCCAAGGCGCGCACCGAGGCGGAGAAACTCACTCAG
GCGGCCACCGAGGGGGCCGACCGCACCCTGCAGGTCGCCCGCGCCGAGGCCGGCGAACGGCTGGCCCAGGCG
CGCCGCGACACCGCCAGCATCGTTGGCCTGGCCCCGGCGCTGGGCGCGACCGATCCCGGCCTGCTCTGGCGC
CTGTACCGCGAACGGGTGCCGGCGATCCTCGGCAAGGCCGGTTCGGTCGGCAGCGTCGATCCGCGCGACGAC
GGCCGCCTGATTCTGCAAGGCGGGCAGCCATGA
Translation:
MSDEAHEGLRSPWLQAGRLAFLALFGVTLLAALAWVFSNVRQIGPENRAVVLRLGALERLAGPGLLLAWPQP
LEQVVLLPSAEQVIERRVEGLLRSEQARRADLDVSLSSDALAGSGYLLTGDAGVVQLDVRVFYKVDDPYDYV
LQGAHVLPALDRLVARNAVQVCAARDLDTILVARPELLGNDSAVAERRERLRGDLVQGINHSLAALAAAGSG
LGIQVVRVDVQSSLPRNAVSAFNAVLTASQLAEQNVAKARTEAEKLTQAATEGADRTLQVARAEAGERLAQA
RRDTASIVGLAPALGATDPGLLWRLYRERVPAILGKAGSVGSVDPRDDGRLILQGGQP*
AnnotationID:2183GeneID:2175
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2437
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Identical to PA2437 of PAO1.







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4353




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21499




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2175
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3718
                           PA2437_tr
                           translation of PA2437
                           346
                           98.26
                           98.55
                           0
                           1665.0
     

     
     
114588
                           gb|AAG05825.1|AE004671_1
                           (AE004671) hypothetical protein PA2437 [Pseudomonas aeruginosa PAO1]
                           346
                           98.26
                           98.55
                           0
                           1665.0
     

     
     
114589
                           gb|AAO58952.1|
                           (AE016876) SPFH domain / Band 7 family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           356
                           69.10
                           79.21
                           10
                           1152.0
     

     






      

          
GC ORFID: 45177How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2437Glimmer Score: 

          
Start: 2055283Stop: 2054243

          
Length: 1041


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2437 translation of PA2437Homolog Bit Score 645.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4161 (ORF: BLASTX 445.0), t_PA2437 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACGAAGCGCACGAGGGGCTGCGCAGCCCCTGGCTGCAGGCCGGACGCCTGGCGTTCCTCGCACTG 
TTCGGCGTGACCCTCCTGGCGGCGCTGGCCTGGGTGTTTTCCAACGTCCGCCAGATCGGCCCGGAGAACCGC 
GCCGTAGTGCTGCGCCTGGGCGCGCTGGAGCGCCTGGCCGGTCCCGGCCTGCTGCTGGCCTGGCCGCAGCCG 
CTGGAGCAGGTGGTGCTGCTGCCGTCCGCCGAACAGGTGATCGAACGCCGCGTCGAGGGCCTGCTGCGCTCC 
GAGCAGGCGCGTCGCGCCGACCTCGACGTCAGCCTGTCCAGCGACGCGCTGGCCGGCTCCGGCTACCTGCTG 
ACCGGCGACGCCGGGGTGGTGCAACTGGACGTGCGGGTGTTCTACAAGGTCGACGACCCGTACGACTACGTC 
CTCCAGGGCGCCCACGTGCTGCCGGCGCTGGACCGGCTGGTGGCGCGCAACGCCGTGCAGGtCTGCGCCGCG 
CGCGACCTGGACACCATCCTGGTGGCGCGCCCGGAGTTGCTCGGCAACGACAGCGCGGTCGCCGAGCGCCGC 
GAACGCCTGCGCGGCGACCTGGTGCAGGGCATCAACCACAGCCTGGCGGCGCTGGCCGCGGCCGGCAGCGGG 
CTGGGCATCCAGGTGGTGCGGGTCGACGTGCAGTCGAGCCTGCCGCGCAATGCGGTAAGCGCTTTCAACGCG 
GTGCTGACCGCCAGCCAACTGGCCGAGCAGAACGTCGCCAAGGCGCGCACCGAGGCGGAGAAACTCACTCAG 
GCGGCCACCGAGGGGGCCGACCGCACCCTGCAGGTCGCCCGCGCCGAGGCCGGCGAACGGCTGGCCCAGGCG 
CGCCGCGACACCGCCAGCATCGTTGGCCTGGCCCCGGCGCTGGGCGCGACCGATCCCGGCCTGCTCTGGCGC 
CTGTACCGCGAACGGGTGCCGGCGATCCTCGGCAAGGCCGGTTCGGTCGGCAGCGTCGATCCGCGCGACGAC 
GGCCGCCTGATTCTGCAAGGCGGGCAGCCATGA