ViewGene
Locus Name:
GeneID:
Location:

GeneID:2173
TrivialName: PA14_47840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47840
PAO1 Ortholog Locus:PA1268
Sequence Length:945
Protein Length:314
Start: 4256213
Stop: 4257157
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04657.1|AE004556_7 (AE004556) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 312/314 (99%), Positives = 312/314 (99%)
Sequence:
ATGCAACGCATCCGCATCATCGATTCGCATACCGGCGGCGAGCCCACCCGCCTGGTCATCGGCGGCTTTCCC
GATCTCGGCCACGGCGACATGGCTGAGCGCCGGCGCCTGCTCGGCGAGCGCCACGACGCCTGGCGCGCCGCC
TGCATCCTCGAACCGCGCGGCAGCGACGTACTGGTCGGCGCCCTGCTCTGCGCACCGGTCGATCCCGAAGCC
TGTGCCGGAGTGATCTTCTTCAACAACAGTGGCTACCTCGGCATGTGCGGCCACGGCACCATCGGCCTGGTC
GCCTCGCTGGCACACCTCGGGCGGATCGGTCCCGGCGTGCACCGCATCGAGACGCCGGTCGGCGAGGTCGAG
GCGACCCTCCACGAGGACGGCTCGGTCAGCGTGCGCAACGTGCCGGCCTACCGCTACCGTCGCCAGGTCAGC
GTCGAAGTGCCCGGCATCGGCCGGGTCAGCGGCGACATCGCCTGGGGCGGCAACTGGTTCTTCCTGGTCGCC
GGACACGGCCAGCGCCTCGCCGGCGACAACCTCGACGCCCTCACCGCCTACACCGTCGCCGTCCAGCAGGCG
CTGGACGACCAGGACATCCGCGGCGAGGACGGCGGCGCCATCGATCACATCGAACTGTTCGCCGACGACCCC
CACGCCGACAGCCGCAACTTCGTGCTCTGCCCCGGCAAGGCCTACGACCGCTCGCCCTGCGGCACCGGCACC
AGTGCCAAGCTGGCCTGCCTGGCCGCCGACGGCAAGCTGCTGCCCGGCCAGCCCTGGCGCCAGGCGAGCGTG
ATCGGCAGCCAGTTCGAGGGGCGTTACGAATGGCTCGACGGCCAGCCCGGCGGGCGTATCGTGCCGACCATC
CGCGGCCGCGCCCACGTCAGCGCGGAAGCCACCCTGCTGCTGGCGGACGACGATCCGTTCGCCTGGGGCATC
CGCCGGTGA
Translation:
MQRIRIIDSHTGGEPTRLVIGGFPDLGHGDMAERRRLLGERHDAWRAACILEPRGSDVLVGALLCAPVDPEA
CAGVIFFNNSGYLGMCGHGTIGLVASLAHLGRIGPGVHRIETPVGEVEATLHEDGSVSVRNVPAYRYRRQVS
VEVPGIGRVSGDIAWGGNWFFLVAGHGQRLAGDNLDALTAYTVAVQQALDDQDIRGEDGGAIDHIELFADDP
HADSRNFVLCPGKAYDRSPCGTGTSAKLACLAADGKLLPGQPWRQASVIGSQFEGRYEWLDGQPGGRIVPTI
RGRAHVSAEATLLLADDDPFAWGIRR*
AnnotationID:2181GeneID:2173
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 14:02:44
Gene Name:
Confidence Code:3
GeneProduct:putative proline racemase
Cell Localization:()
Synonyms:PA1268
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3938,pfam05544
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66882.1|AE016316_7 (AE016778) epimerase, putative [Pseudomonas putida KT2440]
          Length = 308

 Score =  447 bits (1149), Expect = e-125
 Identities = 215/312 (68%), Positives = 254/312 (81%), Gaps = 4/312 (1%)








 
Structural Features:
COG3938, COG3938, Proline racemase [Amino acid transport and metabolism]
CD-Length = 341 residues,  97.1% aligned
Score =  384 bits (988), Expect = 6e-108
Identities = 144/331 (43%), Positives = 181/331 (54%), Gaps = 17/331 (5%)

pfam05544, Pro_racemase, Proline racemase. 
CD-Length = 325 residues, 100.0% aligned
Score =  378 bits (971), Expect = 7e-106
Identities = 140/325 (43%), Positives = 179/325 (55%), Gaps = 17/325 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4349




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21495




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37521




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2173_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2173
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3716
                           PA1268_tr
                           translation of PA1268
                           314
                           99.36
                           99.36
                           0
                           1664.0
     

     
     
114530
                           gb|AAG04657.1|AE004556_7
                           (AE004556) hypothetical protein PA1268 [Pseudomonas aeruginosa PAO1]
                           314
                           99.36
                           99.36
                           0
                           1664.0
     

     
     
114531
                           gb|AAN66882.1|AE016316_7
                           (AE016778) epimerase, putative [Pseudomonas putida KT2440]
                           314
                           68.47
                           80.89
                           6
                           1152.0
     

     
     
114532
                           gb|AAQ60494.2|
                           (AE016920) probable proline racemace [Chromobacterium violaceum ATCC 12472]
                           314
                           67.51
                           78.66
                           6
                           1142.0
     

     
     
114533
                           emb|CAE14536.1|
                           (BX571866) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           324
                           61.72
                           73.76
                           14
                           1064.0
     

     






      

          
GC ORFID: 45175How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1268Glimmer Score: 

          
Start: 697696Stop: 696752

          
Length: 945


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1268 translation of PA1268Homolog Bit Score 645.0

          
Other Homologs:  t_PA1268 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACGCATCCGCATCATCGATTCGCATACCGGCGGCGAGCCCACCCGCCTGGTCATCGGCGGCTTTCCC 
GATCTCGGCCACGGCGACATGGCTGAGCGCCGGCGCCTGCTCGGCGAGCGCCACGACGCCTGGCGCGCCGCC 
TGCATCCTCGAACCGCGCGGCAGCGACGTACTGGTCGGCGCCCTGCTCTGCGCACCGGTCGATCCCGAAGCC 
TGTGCCGGAGTGATCTTCTTCAACAACAGTGGCTACCTCGGCATGTGCGGCCACGGCACCATCGGCCTGGTC 
GCCTCGCTGGCACACCTCGGGCGGATCGGTCCCGGCGTGCACCGCATCGAGACGCCGGTCGGCGAGGTCGAG 
GCGACCCTCCACGAGGACGGCTCGGTCAGCGTGCGCAACGTGCCGGCCTACCGCTACCGTCGCCAGGTCAGC 
GTCGAAGTGCCCGGCATCGGCCGGGTCAGCGGCGACATCGCCTGGGGCGGCAACTGGTTCTTCCTGGTCGCC 
GGACACGGCCAGCGCCTCGCCGGCGACAACCTCGACGCCCTCACCGCCTACACCGTCGCCGTCCAGCAGGCG 
CTGGACGACCAGGACATCCGCGGCGAGGACGGCGGCGCCATCGATCACATCGAACTGTTCGCCGACGACCCC 
CACGCCGACAGCCGCAACTTCGTGCTCTGCCCCGGCAAGGCCTACGACCGCTCGCCCTGCGGCACCGGCACC 
AGTGCCAAGCTGGCCTGCCTGGCCGCCGACGGCAAGCTGCTGCCCGGCCAGCCCTGGCGCCAGGCGAGCGTG 
ATCGGCAGCCAGTTCGAGGGGCGTTACGAATGGCTCGACGGCCAGCCCGGCGGGCGTATCGTGCCGACCATC 
CGCGGCCGCGCCCACGTCAGCGCGGAAGCCACCCTGCTGCTGGCGGACGACGATCCGTTCGCCTGGGGCATC 
CGCCGGTGA