ViewGene
Locus Name:
GeneID:
Location:

GeneID:2171
TrivialName: PA14_00250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00250
PAO1 Ortholog Locus:PA0023
Sequence Length:978
Protein Length:325
Start: 25566
Stop: 24589
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03413.1|AE004441_14 (AE004441) quinone oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 324/325 (99%), Positives = 324/325 (99%)
Sequence:
ATGGCCAAGCGCATCCAGTTCGCTGCCTACGGCGGCCCCGAAGTCCTCGAATACCGCGACTACCAACCCGCC
GAGCCGGGCCCCCGGGAAGTCCGCGTGCGTAATCGCGCCATCGGCCTGAACTTCATCGACACCTACTACCGT
AGCGGCCTCTATCCAGCCCCCGGCTTCCCTTCGGGGCTGGGTAGCGAAGGGGCCGGCGAGGTCGAGGCGGTG
GGCAGCGAAGTGACCCGTTTCAAGGTCGGCGACCGCGTCGCCTACGCCACCGGCCCGCTGGGCGCCTACAGC
GAACTGCATGTGCTGGCGGAGGAGAAGCTGGTCCACCTGCCCGACGGCATCGACTTCGAACAGGCCGCCGCG
GTGATGCTCAAGGGGCTCACCACCCAATACCTGCTGCGCCAGACCTACGAACTGCGGGGCGGCGAAACCATT
CTCTTCCATGCCGCCGCGGGCGGCGTGGGCCTGTTCGCCTGCCAATGGGCCAAGGCCCTTGGAGTGCAACTG
ATCGGCACCGTCAGCTCGCCGGAAAAGGCGCGCCTGGCCAGGCAGCACGGTGCCTGGGAGACCATCGACTAC
AGCCACGAGAACGTGGCGCGGCGGGTGCTCGAACTGACCGACGGGAAGAAGTGCCCGGTGGTCTACGACTCG
GTGGGCAAGGATACCTGGGAAACCTCGCTGGACTGCGTGGCGCCGCGCGGCTTGCTGGTCAGCTTCGGCAAC
GCCTCGGGGCCGGTGACCGGGGTCAACCTCGGCATCCTCTCGCAGAAGGGTTCGCTGTACGTGACCCGGCCG
ACCCTGGGCAGCTACGCCGATACCCCGGAAAAACTCCAGGCGATGGCCGACGAGCTGTTCGGCCTGATCGAG
CGCGGTGACATCCGCATCGAGATCAACCAGCGCTTCGCCCTGGCCGAAGCAGCCAGGGCGCATACCGAACTG
GCCGCACGGCGAACCACCGGCTCGACCGTACTGTTGCCCTGA
Translation:
MAKRIQFAAYGGPEVLEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLYPAPGFPSGLGSEGAGEVEAV
GSEVTRFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAVMLKGLTTQYLLRQTYELRGGETI
LFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKARLARQHGAWETIDYSHENVARRVLELTDGKKCPVVYDS
VGKDTWETSLDCVAPRGLLVSFGNASGPVTGVNLGILSQKGSLYVTRPTLGSYADTPEKLQAMADELFGLIE
RGDIRIEINQRFALAEAARAHTELAARRTTGSTVLLP*
AnnotationID:2179GeneID:2171
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 13:01:49
Gene Name:qor
Confidence Code:2
GeneProduct:quinone oxidoreductase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0604
Secondary Functional Category(ies):
EC Number:1.6.5.5
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53727.1| (AE016856) quinone oxidoreductase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 325

 Score =  491 bits (1264), Expect = e-138
 Identities = 242/325 (74%), Positives = 279/325 (85%)

>gb|AAN65706.1|AE016197_4 (AE016774) quinone oxidoreductase [Pseudomonas putida KT2440]
          Length = 325

 Score =  471 bits (1213), Expect = e-132
 Identities = 232/325 (71%), Positives = 270/325 (83%)

>emb|CAE32390.1| (BX640442) quinone oxidoreductase [Bordetella bronchiseptica]
          Length = 329

 Score =  428 bits (1101), Expect = e-119
 Identities = 214/323 (66%), Positives = 252/323 (78%), Gaps = 1/323 (0%)








 
Structural Features:
COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 326 residues, 100.0% aligned
Score =  295 bits (756), Expect = 6e-81
Identities = 149/328 (45%), Positives = 180/328 (54%), Gaps = 6/328 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4345




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21491




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33386




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2171_cdd.html


    		




 
URL:

















    ReferenceID:35522




  
Author/Investigator(s):
        Blase M, Bruntner C, Tshisuaka B, Fetzner S, Lingens F.





  
Title:
        Cloning, expression, and sequence analysis of the three genes encoding quinoline 2-oxidoreductase, a molybdenum-containing hydroxylase from Pseudomonas putida 86.




  
PubMed:
        8798497


MedLine:
        




    
Source:
J Biol Chem. 1996 Sep 20;271(38):23068-79.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8798497









           
Homologs By Global Alignment 

           

       



     
Gene ID:2171
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3713
                           PA0023_tr
                           translation of PA0023
                           325
                           99.69
                           99.69
                           0
                           1667.0
     

     
     
114442
                           gb|AAG03413.1|AE004441_14
                           (AE004441) quinone oxidoreductase [Pseudomonas aeruginosa PAO1]
                           325
                           99.69
                           99.69
                           0
                           1667.0
     

     
     
114443
                           emb|CAA59375.1|
                           (X85015) quinone oxidoreductase [Pseudomonas aeruginosa]
                           325
                           99.38
                           99.38
                           0
                           1658.0
     

     
     
114444
                           gb|AAO53727.1|
                           (AE016856) quinone oxidoreductase [Pseudomonas syringae pv. tomato str. DC3000]
                           325
                           74.46
                           85.84
                           0
                           1264.0
     

     
     
114445
                           gb|AAN65706.1|AE016197_4
                           (AE016774) quinone oxidoreductase [Pseudomonas putida KT2440]
                           325
                           71.38
                           83.07
                           0
                           1213.0
     

     






      

          
GC ORFID: 45173How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0023Glimmer Score: 

          
Start: 5826903Stop: 5825926

          
Length: 978


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0023 translation of PA0023Homolog Bit Score 646.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4097 (ORF: BLASTX 503.0), t_PA2680 (ORF: BLASTX 266.0), t_PA0023 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAAGCGCATCCAGTTCGCTGCCTACGGCGGCCCCGAAGTCCTCGAATACCGCGACTACCAACCCGCC 
GAGCCGGGCCCCCGGGAAGTCCGCGTGCGTAATCGCGCCATCGGCCTGAACTTCATCGACACCTACTACCGT 
AGCGGCCTCTATCCAGCCCCCGGCTTCCCTTCGGGGCTGGGTAGCGAAGGGGCCGGCGAGGTCGAGGCGGTG 
GGCAGCGAAGTGACCCGTTTCAAGGTCGGCGACCGCGTCGCCTACGCCACCGGCCCGCTGGGCGCCTACAGC 
GAACTGCATGTGCTGGCGGAGGAGAAGCTGGTCCACCTGCCCGACGGCATCGACTTCGAACAGGCCGCCGCG 
GTGATGCTCAAGGGGCTCACCACCCAATACCTGCTGCGCCAGACCTACGAACTGCGGGGCGGCGAAACCATT 
CTCTTCCATGCCGCCGCGGGCGGCGTGGGCCTGTTCGCCTGCCAATGGGCCAAGGCCCTTGGAGTGCAACTG 
ATCGGCACCGTCAGCTCGCCGGAAAAGGCGCGCCTGGCCAGGCAGCACGGTGCCTGGGAGACCATCGACTAC 
AGCCACGAGAACGTGGCGCGGCGGGTGCTCGAACTGACCGACGGGAAGAAGTGCCCGGTGGTCTACGACTCG 
GTGGGCAAGGATACCTGGGAAACCTCGCTGGACTGCGTGGCGCCGCGCGGCTTGCTGGTCAGCTTCGGCAAC 
GCCTCGGGGCCGGTGACCGGGGTCAACCTCGGCATCCTCTCGCAGAAGGGTTCGCTGTACGTGACCCGGCCG 
ACCCTGGGCAGCTACGCCGATACCCCGGAAAAACTCCAGGCGATGGCCGACGAGCTGTTCGGCCTGATCGAG 
CGCGGTGACATCCGCATCGAGATCAACCAGCGCTTCGCCCTGGCCGAAGCAGCCAGGGCGCATACCGAACTG 
GCCGCACGGCGAACCACCGGCTCGACCGTACTGTTGCCCTGA